View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4131_low_11 (Length: 239)

Name: NF4131_low_11
Description: NF4131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4131_low_11
NF4131_low_11
[»] chr7 (2 HSPs)
chr7 (17-239)||(22555108-22555330)
chr7 (17-68)||(30861006-30861057)
[»] chr2 (3 HSPs)
chr2 (170-213)||(11761153-11761196)
chr2 (171-215)||(37041660-37041704)
chr2 (17-69)||(41422140-41422192)
[»] chr6 (6 HSPs)
chr6 (170-227)||(9039435-9039492)
chr6 (171-231)||(18142468-18142528)
chr6 (170-215)||(10862279-10862324)
chr6 (192-232)||(9039510-9039550)
chr6 (171-227)||(22997044-22997100)
chr6 (171-227)||(23791301-23791357)
[»] chr4 (1 HSPs)
chr4 (171-230)||(48292408-48292467)
[»] chr3 (1 HSPs)
chr3 (20-68)||(4300490-4300538)
[»] scaffold0013 (1 HSPs)
scaffold0013 (169-215)||(62381-62427)
[»] chr1 (2 HSPs)
chr1 (171-215)||(16082983-16083027)
chr1 (17-69)||(44318796-44318848)


Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 22555108 - 22555330
Alignment:
Q  17 aggaaaaattcaatttggattctaaaatccgaaaattgcatgaacattttcgtnnnnnnncatagggtgcgtgagaagatgatagggtgggaaaagtaaa 116  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||       ||||||| |||||||||||||||| |||||||||||||||    
T  22555108 aggaaaaattcaatttggattctaaaatccgaaaatcacatgaacattttcgtaaaaaaacatagggcgcgtgagaagatgataaggtgggaaaagtaaa 22555207  T
Q  117 ggtgtttaaactttgccaatccattatctcctcttgatagttgatttgggcttagaaaattgcttttctaacgtccaaaacttcctaataacacatggac 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22555208 ggtgtttaaactttgccaatccattatctcctcttgatagttgatttgggcttagaaaattgcttttctaacatccaaaacttcctaataacacatggac 22555307  T
Q  217 ataaccaaaaacaccctaacgat 239  Q
    ||||||||||||||| |||||||    
T  22555308 ataaccaaaaacaccttaacgat 22555330  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 30861057 - 30861006
Alignment:
Q  17 aggaaaaattcaatttggattctaaaatccgaaaattgcatgaacattttcg 68  Q
    |||||||| |||||| |||||||||||||||||||| |||| ||||||||||    
T  30861057 aggaaaaactcaattcggattctaaaatccgaaaatcgcataaacattttcg 30861006  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 11761196 - 11761153
Alignment:
Q  170 agaaaattgcttttctaacgtccaaaacttcctaataacacatg 213  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  11761196 agaaaattgcttttctaacgtacaaaacttcctaataacacatg 11761153  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 37041660 - 37041704
Alignment:
Q  171 gaaaattgcttttctaacgtccaaaacttcctaataacacatgga 215  Q
    ||||||||||||||| || |||| || ||||||||||||||||||    
T  37041660 gaaaattgcttttctgacttccagaagttcctaataacacatgga 37041704  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 41422192 - 41422140
Alignment:
Q  17 aggaaaaattcaatttggattctaaaatccgaaaattgcatgaacattttcgt 69  Q
    |||||||| |||||| | ||||||||||| ||||||| |||||| ||||||||    
T  41422192 aggaaaaactcaattcgcattctaaaatctgaaaattacatgaatattttcgt 41422140  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 9039435 - 9039492
Alignment:
Q  170 agaaaattgcttttctaacgtccaaaacttcctaataacacatggacataaccaaaaa 227  Q
    ||||||||| ||||||||| |||||||||||||||||||||||| | || ||||||||    
T  9039435 agaaaattgtttttctaacctccaaaacttcctaataacacatgaaaatgaccaaaaa 9039492  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 18142528 - 18142468
Alignment:
Q  171 gaaaattgcttttctaacgtccaaaacttcctaataacacatggacataaccaaaaacacc 231  Q
    |||||||||||||||||| || ||| ||||||||||||||||| | || || |||||||||    
T  18142528 gaaaattgcttttctaacatcaaaagcttcctaataacacatgaaaatgactaaaaacacc 18142468  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 10862279 - 10862324
Alignment:
Q  170 agaaaattgcttttctaacgtccaaaacttcctaataacacatgga 215  Q
    ||||||||||||||||||| |||| || ||| ||||||||||||||    
T  10862279 agaaaattgcttttctaacatccataagttcttaataacacatgga 10862324  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 9039550 - 9039510
Alignment:
Q  192 caaaacttcctaataacacatggacataaccaaaaacaccc 232  Q
    ||||||||||||| |||||||||| || |||||||||||||    
T  9039550 caaaacttcctaaaaacacatggaaatgaccaaaaacaccc 9039510  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 22997100 - 22997044
Alignment:
Q  171 gaaaattgcttttctaacgtccaaaacttcctaataacacatggacataaccaaaaa 227  Q
    |||||||||||||||||| |  ||||||| ||||||||||||| | || ||||||||    
T  22997100 gaaaattgcttttctaacattaaaaactttctaataacacatgaaaatgaccaaaaa 22997044  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 23791301 - 23791357
Alignment:
Q  171 gaaaattgcttttctaacgtccaaaacttcctaataacacatggacataaccaaaaa 227  Q
    |||||||||||||||||| |  ||||||| ||||||||||||| | || ||||||||    
T  23791301 gaaaattgcttttctaacattaaaaactttctaataacacatgaaaatgaccaaaaa 23791357  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 48292467 - 48292408
Alignment:
Q  171 gaaaattgcttttctaacgtccaaaacttcctaataacacatggacataaccaaaaacac 230  Q
    ||||||||||||| |||| ||||||||||| |||||||||||| | || |||||||||||    
T  48292467 gaaaattgcttttataacatccaaaacttcttaataacacatgtaaatgaccaaaaacac 48292408  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 4300490 - 4300538
Alignment:
Q  20 aaaaattcaatttggattctaaaatccgaaaattgcatgaacattttcg 68  Q
    ||||||| |||||||||||||||||||||||||  |||||||| |||||    
T  4300490 aaaaatttaatttggattctaaaatccgaaaatcacatgaacaatttcg 4300538  T

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Target: scaffold0013 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 62381 - 62427
Alignment:
Q  169 tagaaaattgcttttctaacgtccaaaacttcctaataacacatgga 215  Q
    |||||||||||||||||||| || | || ||||||||||||||||||    
T  62381 tagaaaattgcttttctaacttcaataagttcctaataacacatgga 62427  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 16083027 - 16082983
Alignment:
Q  171 gaaaattgcttttctaacgtccaaaacttcctaataacacatgga 215  Q
    ||||||||||||||| || || ||||| |||||||||||||||||    
T  16083027 gaaaattgcttttctgacatcaaaaacgtcctaataacacatgga 16082983  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 44318848 - 44318796
Alignment:
Q  17 aggaaaaattcaatttggattctaaaatccgaaaattgcatgaacattttcgt 69  Q
    |||||||| |||||| |||||||||||||| |||||| ||||  |||||||||    
T  44318848 aggaaaaactcaattcggattctaaaatccaaaaattacatggccattttcgt 44318796  T

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