View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4131_low_12 (Length: 239)
Name: NF4131_low_12
Description: NF4131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4131_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 10217891 - 10218097
Alignment:
| Q |
20 |
acaatccacagtaattttatattttactgattagaagcttttaaacattttgtggtgcagctacctccaaagagtgtcaaaacgtaaagcttctgtaaaa |
119 |
Q |
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| T |
10217891 |
acaatccacagtaattttatattttactgattagaagcttttaaacattttgtggtgcagctacccccaaagagtgtcaaaacgtaaagcttctgtaaaa |
10217990 |
T |
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| Q |
120 |
cacatgttttataatccagaggatgttaaattctttaaggtaagaaaacatttt-cattgatgaattgatagaattgaaagagattattctttaaaaatt |
218 |
Q |
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| T |
10217991 |
cacatgttttataatccagaggatgttaagttctttaaggtaagaaaacattttccattgatgaattgatagaattgaaagagattattctttaaaaatt |
10218090 |
T |
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| Q |
219 |
gttctta |
225 |
Q |
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||||||| |
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| T |
10218091 |
gttctta |
10218097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 58 - 166
Target Start/End: Complemental strand, 53886158 - 53886050
Alignment:
| Q |
58 |
ttttaaacattttgtggtgcagctacctccaaagagtgtcaaaacgtaaagcttctgtaaaacacatgttttataatccagaggatgttaaattctttaa |
157 |
Q |
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|||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||| | ||||||||| |||||||||||||||||||||| || || |
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| T |
53886158 |
ttttgaacattttgtggtgcagctacccccaaagagtatcaaaacgtaaagcttctgtgagacacatgttctataatccagaggatgttaaatggttcaa |
53886059 |
T |
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| Q |
158 |
ggtaagaaa |
166 |
Q |
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| T |
53886058 |
ggtaagaaa |
53886050 |
T |
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