View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4131_low_15 (Length: 228)
Name: NF4131_low_15
Description: NF4131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4131_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 31648626 - 31648529
Alignment:
| Q |
10 |
tggactattaagtgcaatgctagttataacaaaatattaattttcacgcgggtttgaatcaaaatcaaattactcatgggaaatatttatctctccta |
107 |
Q |
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| T |
31648626 |
tggactattaagtgtaatgttagttataacaaaatattaattttcacgcgggtttgaatcaaaatccaattactcatgggcaatatttatctctccta |
31648529 |
T |
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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 31648465 - 31648412
Alignment:
| Q |
175 |
atcactaaatctttcattgttcccaacatcaaacatgttcctaaaactaaaccc |
228 |
Q |
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| T |
31648465 |
atcactaaatctttcattgttcccaacatcaaacatgttcctaaaactaaaccc |
31648412 |
T |
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