View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4131_low_16 (Length: 227)
Name: NF4131_low_16
Description: NF4131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4131_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 20479330 - 20479131
Alignment:
| Q |
15 |
gaatggaaagaagggtcaagaacgaaagcggaatcaatttgaattcggcattcgattgttgtcactgatagtttcatacctttattttcatcttttcaag |
114 |
Q |
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| T |
20479330 |
gaatggaaagaagggtcaagaacgaaagcggaatcaatttgaattcggcattcgattgttgtcactgatagtttcatacctttattttcatcttttcaag |
20479231 |
T |
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| Q |
115 |
aggaagaaggaggttagctttgaggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctccaacaaacaatttgccaaaatat |
214 |
Q |
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| T |
20479230 |
aggaagaaggaggttagctttgaggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctccaacaaacaatttgccaaaatat |
20479131 |
T |
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Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 29727565 - 29727662
Alignment:
| Q |
117 |
gaagaaggaggttagctttgaggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctccaacaaacaatttgccaaaatat |
214 |
Q |
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| T |
29727565 |
gaagcaggagattagctttcaggagtttaagattaaggttttggaacctggcttagtagaccatattgttgtctccaacaaagaatttgccaaaatat |
29727662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 38515005 - 38514942
Alignment:
| Q |
128 |
ttagctttgaggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctc |
191 |
Q |
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| T |
38515005 |
ttagctttcaggagtttgtgaataagcttttggaaccaggattggtagatcatattgttgtctc |
38514942 |
T |
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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 24003047 - 24003124
Alignment:
| Q |
137 |
aggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctccaacaaacaatttgccaaaatat |
214 |
Q |
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| T |
24003047 |
aggagtttaaaaataagcttttggaaccaggattagtagaccatattgttgtctccaacaaatcagttgccaaaatat |
24003124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 122 - 214
Target Start/End: Original strand, 16837143 - 16837235
Alignment:
| Q |
122 |
aggaggttagctttgaggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctccaacaaacaatttgccaaaatat |
214 |
Q |
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| T |
16837143 |
aggagattagctttcaggagtttaagattaaggttttggaacctggcttagtagaccatattgttgtctctaacaaagaacttgccaaaatat |
16837235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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