View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4131_low_18 (Length: 215)
Name: NF4131_low_18
Description: NF4131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4131_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 17613765 - 17613628
Alignment:
| Q |
19 |
caacatggcttcacaatatatatcacaacaagtgaacctttcctcaagtagtacatacatagatatcaatccctgtacactaggttctgcatgatatatg |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17613765 |
caacatggcttcaaaatatatatcacaacaagtgaatctttcctcaag--gtacatacatagatatcaatccctgtacactaggttctgcgtgatatatg |
17613668 |
T |
|
| Q |
119 |
tctgttagcaatgaaattaaggcgtaaagacaccgtcatc |
158 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
17613667 |
tccgttagcactgaaattaaggcgtaaagacaccatcatc |
17613628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 17693497 - 17693361
Alignment:
| Q |
19 |
caacatggcttcacaatatatatcacaacaagtgaacctttcctcaagtagtacatacatagatatcaatccctgtacactaggttctgcatgatatatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| ||||||||||||| | | |
|
|
| T |
17693497 |
caacatggcttcacaatatatatcacaacaagtgaacctttcctcaag--gtacata-atagatatcaaaccctgtacactaagttctgcatgatagacg |
17693401 |
T |
|
| Q |
119 |
tctgttagcaatgaaattaaggcgtaaagacaccgtcatc |
158 |
Q |
| |
|
| ||||||| |||||||||||| |||||||||| ||||| |
|
|
| T |
17693400 |
cccgttagcactgaaattaaggcataaagacaccatcatc |
17693361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 158
Target Start/End: Complemental strand, 17671324 - 17671209
Alignment:
| Q |
43 |
acaacaagtgaacctttcctcaagtagtacatacatagatatcaatccctgtacactaggttctgcatgatatatgtctgttagcaatgaaattaaggcg |
142 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||| |
|
|
| T |
17671324 |
acaacaagtgaaccattcatcaagtggtacatacatagatatcaatccctgtacactaggttctgcatgatagatgtccgttagcactgaaactaaggcg |
17671225 |
T |
|
| Q |
143 |
taaagacaccgtcatc |
158 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
17671224 |
aaaagacaccatcatc |
17671209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 17657816 - 17657758
Alignment:
| Q |
43 |
acaacaagtgaacctttcctcaagtagtacatacatagatatcaatccctgtacactag |
101 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
17657816 |
acaacaagtgaaccattcatcaagtggtacatacatagatatcaattcctgtacactag |
17657758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 192
Target Start/End: Complemental strand, 17613569 - 17613540
Alignment:
| Q |
163 |
aaggttaggtcactcttcacaagcaccata |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17613569 |
aaggttaggtcactcttcacaagcaccata |
17613540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 192
Target Start/End: Complemental strand, 17626754 - 17626725
Alignment:
| Q |
163 |
aaggttaggtcactcttcacaagcaccata |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17626754 |
aaggttaggtcactcttcacaagcaccata |
17626725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 163 - 192
Target Start/End: Complemental strand, 17671150 - 17671121
Alignment:
| Q |
163 |
aaggttaggtcactcttcacaagcaccata |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17671150 |
aaggttaggtcactcttcacaagcaccata |
17671121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University