View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4131_low_3 (Length: 454)
Name: NF4131_low_3
Description: NF4131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4131_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 2484425 - 2484003
Alignment:
| Q |
1 |
tcaatcagaaaaactaatgaaggagaaactagttaaacaaagaaacaaatcaaaagagagaacgaatcaaatagagggaagtgaagtgcaatcataaagg |
100 |
Q |
| |
|
||||| |||||||||||||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2484425 |
tcaatgagaaaaactaatgagggagaaaccaattaaacaaacaaacaaatcaaaagagagaacgaatcaaatagagggaagtgaagtgcaatcataaagg |
2484326 |
T |
|
| Q |
101 |
ggagatatgcagtcaaacagaaaggaagaaaccaaagagagaaagacaatcaaagtgagaagtcaacataccaaaccaaatgaaccaaaccgaattcaaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2484325 |
ggagatgtgcagtcaaacagaaaggaagaaaccaaagagagaaagacaatcaaagtgagaagtcaacataccaaacc--------------gaattcaaa |
2484240 |
T |
|
| Q |
201 |
gtacaaccagaataaccaaccttaatcaaaccaccatttaccaaatcttccttgacagccccatcaataatatcaatatcaattcattttgcattcgaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2484239 |
gtacaaccagaataaccaaccttaatcaaaccaccatttaccaaatcttccttgacagccccatcaataatatcaatatcaattcattttgcattcgaac |
2484140 |
T |
|
| Q |
301 |
taaatatacaatttatcaccaaattgcatcacaaccacaccaaacaaaccattctgagtggatcgcaatattttttcttattaccaaaccgcctctcaat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2484139 |
taaatatacaatttatcaccaaattgcatcacaaccacaccaaacaagcctttctgagtggatcgtaatattttttcttattaccaaaccgcctctcaat |
2484040 |
T |
|
| Q |
401 |
taatccaataacttcaaatgcaattgtggtagcaaat |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2484039 |
taatccaataacttcaaatgcaattgtggtagcaaat |
2484003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 437
Target Start/End: Original strand, 17927413 - 17927545
Alignment:
| Q |
306 |
atacaatttatcaccaaattgcatcacaaccacaccaaacaaaccattctgagtggatcgcaatatttt-ttcttattaccaaaccgcctctcaattaat |
404 |
Q |
| |
|
||||||||||||| ||||| ||| |||||| ||||||| |||| | |||||||||| | |||||| ||||||||||| | | |||||| ||||||| |
|
|
| T |
17927413 |
atacaatttatcataaaatttcataacaaccgcaccaaataaacaaaattgagtggatctccctatttttttcttattaccgatctgcctcttaattaat |
17927512 |
T |
|
| Q |
405 |
ccaataacttcaaatgcaattgtggtagcaaat |
437 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||| |
|
|
| T |
17927513 |
ccaataacttcaaacacaactatggtagcaaat |
17927545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University