View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4131_low_4 (Length: 404)
Name: NF4131_low_4
Description: NF4131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4131_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 25 - 394
Target Start/End: Complemental strand, 33185925 - 33185556
Alignment:
| Q |
25 |
cattgagctctgtttccaacaatggaagcttcacatgaaagagagagaatcgatcaattcttcaattttttccatcaacaacaacaacccaccatgtcat |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33185925 |
cattgagctctgtttccaacaatggaagcttcacatgaaagagagagaatcgatcaattcttcaattttttccatcaacaacaacaacccaccatgtcat |
33185826 |
T |
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| Q |
125 |
tctccatcatcgacgcttcaaagaagcgaaaacgatggacgaagattttcccgctacaatcgttcgctgaccctggttgtccaatttcaccttcaggtcc |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33185825 |
tctccatcatcgacgcttcaaagaagcgaaaacgatggacgaagattttcccgctacaatcgttcgctgaccctggttgtccaatttcaccttcaggtcc |
33185726 |
T |
|
| Q |
225 |
gttccgtgaaaacgttcgactctttcttcaagaagctggtgagcttgaagattatacggttatgggaaatcctctttggtgtacttttctgattcatgaa |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33185725 |
gttccgtgaaaacgttcgactctttcttcaagaagctggtgagcttgaagattatacggttatgggaaatcctctttggtgcacttttctgattcatgaa |
33185626 |
T |
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| Q |
325 |
aagaagaatctaatggttcctttctatgctcttgaagaagaagtttataactcttctcatcctttctgtg |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33185625 |
aagaagaatctaatggttcctttctatgctcttgaagaagaagtttataactcttctcatcctttctgtg |
33185556 |
T |
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