View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4132_high_2 (Length: 208)
Name: NF4132_high_2
Description: NF4132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4132_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 40820176 - 40820269
Alignment:
| Q |
19 |
aaaactggagtaaacggcaacaaaaatgtttgatttttggaggtaatggcaacgatcaagcctcattcgagcaatagaagtttctatctgtata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40820176 |
aaaactggagtaaacggcaacaaaaatgtttgatttttggaggtaatggcaacgatcaagcctcattcgagcaacagaagtttctatctgtata |
40820269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 40820312 - 40820350
Alignment:
| Q |
155 |
cctaactcctaagatatagaaacgagttaatgacctatg |
193 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40820312 |
cctaactcctaagagatagaaacgagttaatgacctatg |
40820350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University