View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4132_low_1 (Length: 425)
Name: NF4132_low_1
Description: NF4132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4132_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 17 - 337
Target Start/End: Complemental strand, 3929947 - 3929628
Alignment:
| Q |
17 |
aggcgaaagggcttagaagatttgattacattgcatggattcacagttattttctttagatgtttagatgatagagttttannnnnnnngttaggatttg |
116 |
Q |
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| T |
3929947 |
aggcgaaagggcttagaagatttgattacattgcatggattcacagttattttctttagatgtttagatgatagagttttattttgtt-gttaggatttg |
3929849 |
T |
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| Q |
117 |
aatctaatttctcttggaaaaagtgaatcttgaattttgaattgatctgttgaatctatgatacttaatcaaattgattgcatttaattgttcaaactaa |
216 |
Q |
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| T |
3929848 |
aatctaatttctcttggaaaaagtgaatcttgaattttgaattgatctgttgaatctatgatacttaatcaaattgattgcatttaattgttcaaactaa |
3929749 |
T |
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| Q |
217 |
ttttcaattttgtttaacttgatttgatgaaaatttgatcatagtaactaatttgttgctttttagctttgaagttgggaaattttgcttcaattttaat |
316 |
Q |
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| T |
3929748 |
ttttcaattttgtttaacttgatttgatgaaaattcgatcatagtaactaatttgttgctttttagctttgacgttgggaaattttgcttcaattttaat |
3929649 |
T |
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| Q |
317 |
atcgaagttgtctatggatat |
337 |
Q |
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|| |||||||||||||||||| |
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| T |
3929648 |
attgaagttgtctatggatat |
3929628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 375 - 407
Target Start/End: Complemental strand, 3929520 - 3929488
Alignment:
| Q |
375 |
aatcatttatcaggtagtcaaatttactacact |
407 |
Q |
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| T |
3929520 |
aatcatttatcaggtagtcaaatttactacact |
3929488 |
T |
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