View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4132_low_2 (Length: 391)
Name: NF4132_low_2
Description: NF4132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4132_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 376
Target Start/End: Original strand, 26833606 - 26833974
Alignment:
| Q |
9 |
acatcatcaacgacatgcctaggcaaagaaacactgcaactctcagcaatggcacgatcaatggctctctgatttgtctccaacgaaactcgagttgtaa |
108 |
Q |
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| T |
26833606 |
acatcatcaacgacatgcctaggcaaacaaacactgcaactctcagcaatggcacgatcaatggctctctgatttgtctccaaagaaactcgtgttgtaa |
26833705 |
T |
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| Q |
109 |
accaagtccattccttgctccttgaaaagcatacannnnnnnacttcaaatgnnnnnnngaataaatttaaccaactttacttaaagaaaaggagaaaaa |
208 |
Q |
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| T |
26833706 |
accaagtccattccttgctccttgaaaagcatacatttttttacttcaaatgtttttttgaataaatttaaccaactttacttaaagaaaaggagaaaaa |
26833805 |
T |
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| Q |
209 |
cttgtttttgtttccaggg-tcatgcagaaaagaaactgtggaagaggtagaaaaattaacaaaacgttgatatgcttgaagatctaagcatgttatggt |
307 |
Q |
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| T |
26833806 |
cttgtttttgtttccaggggtcatgcagaaaagaaactgtgaaagaggtagaaaaattaacaaaacgttgatatgcttgaagatctaagcatgttatggt |
26833905 |
T |
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| Q |
308 |
tccttaatgaaaaagaaaagagagacagaacagaacaatgacaatgcaaagcaggtaaatggttggaaa |
376 |
Q |
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| T |
26833906 |
tccttaatgaaaaagaaaagagagacagaacagaacaatgacaatgcaaagcaggtaaatggttggaaa |
26833974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 26786819 - 26786891
Alignment:
| Q |
11 |
atcatcaacgacatgcctaggcaaagaaacactgcaactctcagcaatggcacgatcaatggctctctgattt |
83 |
Q |
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| T |
26786819 |
atcatcaatgacatgcttaggcagataaacactgcagctctcagcattggcacgatcaaaggttctcttattt |
26786891 |
T |
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