View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4133_high_5 (Length: 229)
Name: NF4133_high_5
Description: NF4133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4133_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 55958520 - 55958744
Alignment:
| Q |
1 |
caggtataaacttctctgcatcataccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttcatatccaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
55958520 |
caggtataaacttctctgcatcataccaatatttgggatctcttcacattgcccaagcatttactaacacattagtctttattggtatttcatatccacc |
55958619 |
T |
|
| Q |
101 |
tatgttgcatgcttccctgcattatcttataagcaaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgt |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55958620 |
tatgttgcatgcttccctgcattctcttataagcaaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgt |
55958719 |
T |
|
| Q |
201 |
agatcattctcatatattctctttt |
225 |
Q |
| |
|
|||||| |||||||| ||||||||| |
|
|
| T |
55958720 |
agatcactctcatatgttctctttt |
55958744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 55954964 - 55955188
Alignment:
| Q |
1 |
caggtataaacttctctgcatcataccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttcatatccaac |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| |||||||||| ||| |||||||||||||||||||||||||| | |
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| T |
55954964 |
caggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcatttactatcacgctagtctttattggtatttcatatccatc |
55955063 |
T |
|
| Q |
101 |
tatgttgcatgcttccctgcattatcttataagcaaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgt |
200 |
Q |
| |
|
||||||||| ||||||||||||| |||| |||||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||| |
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| T |
55955064 |
tatgttgcaagcttccctgcattctcttggaagcaaagtaaaaggtgggtgtaacctcatggtttctttgatcactgacttcaagtaactaagttcatgt |
55955163 |
T |
|
| Q |
201 |
agatcattctcatatattctctttt |
225 |
Q |
| |
|
|||||| |||||||||||||||||| |
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|
| T |
55955164 |
agatcactctcatatattctctttt |
55955188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 4 - 225
Target Start/End: Original strand, 41795733 - 41795956
Alignment:
| Q |
4 |
gtataaacttctctgcatcataccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttcatatccaactat |
103 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||||||||||| |||||||| |||||||||| |||| |||||||||| ||||||||||||||| |||| |
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|
| T |
41795733 |
gtataaaattatctgcatcatatcaatatttgggatctcttccgattgcccatgcatttactatcacactagtctttataggtatttcatatccacctat |
41795832 |
T |
|
| Q |
104 |
gttgcatgcttccctgcattatcttataagcaaagtagcaggtggatgtaac--ctcatagtttctttgatcactgaattcaagtaactaagttcttgta |
201 |
Q |
| |
|
|||||| ||||||||||||| |||| |||||||||| ||||||||||||| ||||| ||||||||||||||||| || ||||||| |||||| |||| |
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|
| T |
41795833 |
gttgcacgcttccctgcattctcttggaagcaaagtaaaaggtggatgtaacctctcattgtttctttgatcactgactttaagtaaccaagttcatgta |
41795932 |
T |
|
| Q |
202 |
gatcattctcatatattctctttt |
225 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
41795933 |
gatcactctcatatattctctttt |
41795956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 12268394 - 12268172
Alignment:
| Q |
1 |
caggtataaacttctctgcatcataccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttcatatccaac |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||| |||||||| ||||||| || | |||||||||||| |||||||||||||| | |
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|
| T |
12268394 |
caggtataaacttctctgcatcagaccaatgattgggatctcttccaattgcccatgcatttaatattaaattagtctttataggtatttcatatcctcc |
12268295 |
T |
|
| Q |
101 |
tatgttgcatgcttccctgcattatcttataagcaaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgt |
200 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| | | | ||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| || |
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|
| T |
12268294 |
tatgttgcatgcttccctgcattctcttgtaagtattgcaccaggtgggtgtaacctcagggtttctttgatcactgacttcaagtaactaagttcatgc |
12268195 |
T |
|
| Q |
201 |
agatcattctcatatattctctt |
223 |
Q |
| |
|
| |||| | ||||| |||||||| |
|
|
| T |
12268194 |
aaatcactttcataaattctctt |
12268172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 12425293 - 12425513
Alignment:
| Q |
3 |
ggtataaacttctctgcatcataccaatatttgggatctcttcccattgcccaagcatttactaacacattagtctttattggtatttcatatccaacta |
102 |
Q |
| |
|
|||||||||||||| |||||| |||||| || |||||||||||| |||||||| ||||||| || | ||||| |||| ||||||||||||||| ||| |
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|
| T |
12425293 |
ggtataaacttctcagcatcagaccaatgttcgggatctcttccaattgcccatgcatttaatattaagttagtttttaaaggtatttcatatccaccta |
12425392 |
T |
|
| Q |
103 |
tgttgcatgcttccctgcattatcttataagcaaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgtag |
202 |
Q |
| |
|
||||||| ||||||||||||| ||| || ||||| ||||||||||| |||||||||| ||||||||||||||| | |||||||| | ||||| ||||| |
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|
| T |
12425393 |
tgttgcacgcttccctgcattctctcatgagcaatgtagcaggtgggtgtaacctcagggtttctttgatcactaacttcaagtacccaagtttatgtag |
12425492 |
T |
|
| Q |
203 |
atcattctcatatattctctt |
223 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
12425493 |
atcactctcatatattctctt |
12425513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 7141688 - 7141631
Alignment:
| Q |
6 |
ataaacttctctgcatcataccaatatttgggatctcttcccattgcccaagcattta |
63 |
Q |
| |
|
|||||| |||| ||||||| ||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
7141688 |
ataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcattta |
7141631 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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