View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4133_low_12 (Length: 212)
Name: NF4133_low_12
Description: NF4133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4133_low_12 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 26788772 - 26788981
Alignment:
| Q |
11 |
agaacctgtgctagtggtgaataatgaatattatattgcaattttcttcatgcttatgtaagttgaagtcgcaaaactaaaattggtgaatcca------ |
104 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26788772 |
agaacctttgctagtggtgaataatgaatattatattgcaattttcttcatgcttatgtaagttgaagtcgcaaaactaaaattggtgaataaagtattg |
26788871 |
T |
|
| Q |
105 |
--aatgccaagttcttctaggagttagaaacaaaagtgccaacgtatccaaatgccaggatgaagaaagcaatagcttgcatgtataagaatatgaagaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26788872 |
ccaatgccaagttcttctaggagttagaaacaaaagtgccaacgtatccaaatgccaggatgaagaaagcaatagcttgaatgtataagaatatgaagaa |
26788971 |
T |
|
| Q |
203 |
ttgatttttc |
212 |
Q |
| |
|
|||||||||| |
|
|
| T |
26788972 |
ttgatttttc |
26788981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 105 - 212
Target Start/End: Original strand, 26829233 - 26829340
Alignment:
| Q |
105 |
aatgccaagttcttctaggagttagaaacaaaagtgccaacgtatccaaatgccaggatgaagaaagcaatagcttgcatgtataagaatatgaagaatt |
204 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||||| |||||||||||| | |
|
|
| T |
26829233 |
aatgccaagttcttctaggagttgggaacaaaagtgccaacatatccaaatgccatgatgaagaaagcaaacgcttggatgtataggaatatgaagaagt |
26829332 |
T |
|
| Q |
205 |
gatttttc |
212 |
Q |
| |
|
|||||||| |
|
|
| T |
26829333 |
gatttttc |
26829340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 26815625 - 26815818
Alignment:
| Q |
28 |
tgaataatgaatattatattgcaattttcttcatgcttatgtaagttgaagtcgcaaa-actaaaattggtgaatcca--------aatgccaagttctt |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||| || ||| ||||||| |||| || |||||||||||| | |||||||| ||||| |
|
|
| T |
26815625 |
tgaataatgaatattatgttgcaattttctacatgcaaatataaactgaagtcacaaataccgaaattggtgaatggagtactgccaatgccaaattctt |
26815724 |
T |
|
| Q |
119 |
ctaggagttagaaacaaaagtgccaacgtatccaaatgccaggatgaagaaagcaatagcttgcatgtataagaatatgaagaattgatttttc |
212 |
Q |
| |
|
||| ||||||| ||||||||||||||| ||||||||||||| ||||| |||||| | ||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
26815725 |
ctatgagttaggaacaaaagtgccaacatatccaaatgccacgatgagaaaagcagtcgcttgcatgtataggaatatgaagaagtaatttttc |
26815818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 26782563 - 26782655
Alignment:
| Q |
105 |
aatgccaagttcttctaggagttagaaacaaaagtgccaacgtatccaaatgccaggatgaagaaagcaatagcttgcatgtataagaatatg |
197 |
Q |
| |
|
||||||||||||| ||||||||| | ||||||||| ||||| |||||||| ||||||| |||||||||||| |||||||| |||| ||||||| |
|
|
| T |
26782563 |
aatgccaagttctgctaggagttgggaacaaaagttccaacatatccaaaggccaggaggaagaaagcaattgcttgcatatataggaatatg |
26782655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University