View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4133_low_6 (Length: 231)

Name: NF4133_low_6
Description: NF4133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4133_low_6
NF4133_low_6
[»] chr7 (16 HSPs)
chr7 (71-213)||(32919002-32919144)
chr7 (75-121)||(19426579-19426625)
chr7 (86-123)||(41227064-41227101)
chr7 (88-120)||(34654567-34654599)
chr7 (75-122)||(24700119-24700166)
chr7 (86-120)||(41080126-41080160)
chr7 (86-124)||(41985126-41985164)
chr7 (79-121)||(49128722-49128764)
chr7 (86-123)||(4971287-4971324)
chr7 (75-120)||(20406541-20406586)
chr7 (86-123)||(37856191-37856228)
chr7 (75-124)||(41966328-41966377)
chr7 (75-120)||(42663084-42663129)
chr7 (86-123)||(47530328-47530365)
chr7 (76-120)||(3247069-3247113)
chr7 (87-119)||(38218378-38218410)
[»] chr6 (20 HSPs)
chr6 (75-122)||(15722529-15722576)
chr6 (86-122)||(30945821-30945857)
chr6 (75-121)||(30714679-30714725)
chr6 (75-123)||(28965866-28965914)
chr6 (75-122)||(11785353-11785400)
chr6 (86-121)||(31417333-31417368)
chr6 (75-121)||(9954547-9954593)
chr6 (75-121)||(30906689-30906735)
chr6 (75-120)||(29376741-29376786)
chr6 (75-120)||(32784738-32784783)
chr6 (87-119)||(1246397-1246429)
chr6 (76-124)||(3088969-3089017)
chr6 (86-122)||(3180029-3180065)
chr6 (86-122)||(3339536-3339572)
chr6 (75-123)||(12044329-12044377)
chr6 (75-123)||(15666799-15666847)
chr6 (75-123)||(19789102-19789150)
chr6 (75-123)||(29383554-29383602)
chr6 (76-120)||(32457279-32457323)
chr6 (75-123)||(34413089-34413137)
[»] chr4 (26 HSPs)
chr4 (76-123)||(9162063-9162110)
chr4 (75-121)||(10994178-10994224)
chr4 (86-123)||(8026790-8026827)
chr4 (75-120)||(18568841-18568886)
chr4 (76-120)||(169529-169573)
chr4 (75-123)||(4896526-4896574)
chr4 (72-120)||(11064112-11064160)
chr4 (75-122)||(23094374-23094421)
chr4 (77-120)||(39010165-39010208)
chr4 (75-122)||(51296215-51296262)
chr4 (75-121)||(47998593-47998639)
chr4 (82-119)||(515657-515694)
chr4 (76-117)||(925089-925130)
chr4 (75-120)||(13252537-13252582)
chr4 (75-120)||(22071496-22071541)
chr4 (76-121)||(34116567-34116612)
chr4 (81-122)||(38864768-38864809)
chr4 (75-120)||(39881056-39881101)
chr4 (86-123)||(41262655-41262692)
chr4 (94-123)||(52697480-52697509)
chr4 (86-122)||(3222987-3223023)
chr4 (87-123)||(24235317-24235353)
chr4 (86-122)||(31221411-31221447)
chr4 (86-122)||(40590610-40590646)
chr4 (86-122)||(44368239-44368275)
chr4 (86-122)||(54036555-54036591)
[»] chr3 (22 HSPs)
chr3 (75-122)||(35272025-35272072)
chr3 (75-119)||(31206877-31206921)
chr3 (75-122)||(7240-7287)
chr3 (75-122)||(43333696-43333743)
chr3 (76-122)||(18169155-18169201)
chr3 (81-123)||(35074122-35074164)
chr3 (75-121)||(41877637-41877683)
chr3 (81-123)||(43169774-43169816)
chr3 (76-122)||(49196694-49196740)
chr3 (75-120)||(462427-462472)
chr3 (86-123)||(1765401-1765438)
chr3 (75-120)||(19418183-19418228)
chr3 (81-122)||(32575424-32575465)
chr3 (86-123)||(48405407-48405444)
chr3 (75-120)||(51464298-51464343)
chr3 (75-123)||(108428-108476)
chr3 (86-122)||(8254025-8254061)
chr3 (75-123)||(11335328-11335376)
chr3 (76-120)||(31017421-31017465)
chr3 (87-123)||(33256306-33256342)
chr3 (86-122)||(52454131-52454167)
chr3 (87-123)||(52564672-52564708)
[»] chr2 (25 HSPs)
chr2 (75-122)||(18373845-18373892)
chr2 (75-122)||(31296871-31296918)
chr2 (75-120)||(30974015-30974060)
chr2 (75-123)||(33296097-33296145)
chr2 (86-118)||(33417242-33417274)
chr2 (75-122)||(4738598-4738645)
chr2 (86-121)||(22353201-22353236)
chr2 (75-121)||(2308348-2308394)
chr2 (76-122)||(10749706-10749752)
chr2 (72-122)||(22390150-22390200)
chr2 (75-121)||(36909869-36909915)
chr2 (75-120)||(5455479-5455524)
chr2 (86-123)||(19529539-19529576)
chr2 (86-123)||(29795444-29795481)
chr2 (75-120)||(39247489-39247534)
chr2 (84-120)||(4344449-4344485)
chr2 (83-123)||(6215267-6215307)
chr2 (76-120)||(21805813-21805857)
chr2 (86-122)||(27307268-27307304)
chr2 (75-123)||(30413752-30413800)
chr2 (87-123)||(35171264-35171300)
chr2 (87-123)||(42607557-42607593)
chr2 (75-123)||(42665838-42665886)
chr2 (87-123)||(44085271-44085307)
chr2 (87-119)||(44105129-44105161)
[»] chr8 (28 HSPs)
chr8 (75-121)||(6161947-6161993)
chr8 (75-120)||(6849287-6849332)
chr8 (76-121)||(36064029-36064074)
chr8 (72-120)||(26871046-26871094)
chr8 (75-123)||(39021469-39021517)
chr8 (82-122)||(44380647-44380687)
chr8 (75-122)||(21418618-21418665)
chr8 (75-122)||(40719669-40719716)
chr8 (75-122)||(45101394-45101441)
chr8 (76-122)||(26294187-26294233)
chr8 (76-122)||(26307444-26307490)
chr8 (76-122)||(34473947-34473993)
chr8 (75-121)||(34970206-34970252)
chr8 (75-121)||(42443103-42443149)
chr8 (86-119)||(6806909-6806942)
chr8 (75-120)||(13884186-13884231)
chr8 (79-124)||(39719278-39719323)
chr8 (75-120)||(41344695-41344740)
chr8 (75-120)||(43873717-43873762)
chr8 (76-120)||(7596918-7596962)
chr8 (75-123)||(11223885-11223933)
chr8 (86-122)||(14710919-14710955)
chr8 (76-120)||(21273737-21273781)
chr8 (75-123)||(22852865-22852913)
chr8 (75-123)||(36497658-36497706)
chr8 (86-122)||(40413375-40413411)
chr8 (75-123)||(40842011-40842059)
chr8 (81-121)||(44086545-44086585)
[»] chr5 (16 HSPs)
chr5 (75-121)||(8897381-8897427)
chr5 (90-122)||(7927353-7927385)
chr5 (75-122)||(14914370-14914417)
chr5 (75-122)||(38500941-38500988)
chr5 (75-121)||(3771032-3771078)
chr5 (86-120)||(27440479-27440513)
chr5 (86-120)||(41460116-41460150)
chr5 (72-120)||(3109609-3109658)
chr5 (75-120)||(12718406-12718451)
chr5 (75-120)||(12779632-12779677)
chr5 (75-120)||(34381012-34381057)
chr5 (75-120)||(39595272-39595317)
chr5 (79-120)||(42699057-42699098)
chr5 (72-123)||(11148508-11148560)
chr5 (75-123)||(26660437-26660485)
chr5 (75-123)||(26932029-26932077)
[»] chr1 (22 HSPs)
chr1 (75-121)||(30530600-30530646)
chr1 (75-123)||(50226905-50226953)
chr1 (86-122)||(50797789-50797825)
chr1 (75-119)||(52714979-52715023)
chr1 (75-122)||(11812385-11812432)
chr1 (81-120)||(16836136-16836175)
chr1 (76-119)||(18959005-18959048)
chr1 (75-122)||(40610227-40610274)
chr1 (86-120)||(34974786-34974820)
chr1 (75-121)||(39669805-39669851)
chr1 (76-122)||(44672057-44672103)
chr1 (94-123)||(21446252-21446281)
chr1 (81-122)||(25302675-25302716)
chr1 (86-123)||(27687545-27687582)
chr1 (86-119)||(51037978-51038011)
chr1 (86-122)||(9011643-9011679)
chr1 (75-119)||(9882685-9882729)
chr1 (93-121)||(13078842-13078870)
chr1 (86-122)||(40596080-40596116)
chr1 (86-122)||(40612112-40612148)
chr1 (86-122)||(42256458-42256494)
chr1 (76-120)||(50528084-50528128)
[»] scaffold0011 (1 HSPs)
scaffold0011 (75-122)||(219690-219737)
[»] scaffold0002 (1 HSPs)
scaffold0002 (72-120)||(6427-6475)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 71 - 213
Target Start/End: Original strand, 32919002 - 32919144
Alignment:
Q  71 taatgttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctcttagagcttggttagaagacatcattctcttttaagactggcaaacctta 170  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32919002 taatgttgtcaaaaaattgtcacaaaatgattgtataaatatcatttctcttagagcttcgttagaagacatcattctcttttaagactggcaaacctta 32919101  T
Q  171 tggaaacaaaagggaaaggatgtttaccagtttgtggacgaat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  32919102 tggaaacaaaagggaaaggatgtttaccagtttgtggacgaat 32919144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 19426625 - 19426579
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctct 121  Q
    |||||||||| |||||||||||||| ||||| |||||||||||||||    
T  19426625 gttgtcaaaaagttgtcacaaaatggttgtacaaatatcatttctct 19426579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 41227101 - 41227064
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  41227101 gttgtcacaaaataattgtataaatatcatttctctta 41227064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 34654599 - 34654567
Alignment:
Q  88 tgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||||||||||||||||||||||||||    
T  34654599 tgtcacaaaatgattgtataaatatcatttctc 34654567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 24700166 - 24700119
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    ||||| |||| ||||| |||||||||||||| ||||||||||||||||    
T  24700166 gttgtaaaaaagttgttacaaaatgattgtacaaatatcatttctctt 24700119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 41080160 - 41080126
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  41080160 gttgtcacaaaatgattgtacaaatatcatttctc 41080126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 41985126 - 41985164
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctcttag 124  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  41985126 gttgtcacaaattgattgtacaaatatcatttctcttag 41985164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 49128764 - 49128722
Alignment:
Q  79 tcaaaaggttgtcacaaaatgattgtataaatatcatttctct 121  Q
    |||||| ||||| |||||||| |||||||||||||||||||||    
T  49128764 tcaaaaagttgttacaaaatggttgtataaatatcatttctct 49128722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 4971324 - 4971287
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  4971324 gttgtcacaaaatggttgtacaaatatcatttctctta 4971287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 20406586 - 20406541
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||| |||||||||| ||| ||||| ||||||||||||||    
T  20406586 gttgtcaaaaagttgtcacaagatggttgtacaaatatcatttctc 20406541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 37856191 - 37856228
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  37856191 gttgtcacaaaatggttgtacaaatatcatttctctta 37856228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 41966377 - 41966328
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctcttag 124  Q
    ||||||||||  |||||||||| || ||||| ||||||||||||||||||    
T  41966377 gttgtcaaaaaattgtcacaaagtggttgtacaaatatcatttctcttag 41966328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 42663129 - 42663084
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||| ||||||||||||||  |||| ||||||||||||||    
T  42663129 gttgtcaaaaagttgtcacaaaatggatgtacaaatatcatttctc 42663084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 47530328 - 47530365
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  47530328 gttgtcataaaatggttgtataaatatcatttctctta 47530365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 3247113 - 3247069
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||  ||||||| ||||||||||| ||||||||||||||    
T  3247113 ttgtcaaaaaattgtcactaaatgattgtacaaatatcatttctc 3247069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 38218378 - 38218410
Alignment:
Q  87 ttgtcacaaaatgattgtataaatatcatttct 119  Q
    ||||||||||||||||||| |||||||||||||    
T  38218378 ttgtcacaaaatgattgtacaaatatcatttct 38218410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 15722529 - 15722576
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  15722529 gttgtcaaaaagttgtcacaaaatgattgtacaaatatcatttctctt 15722576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 30945857 - 30945821
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||||||||||||||||||||||||||||||    
T  30945857 gttgtcacaaaatgattgtataaatatcatttctctt 30945821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 30714725 - 30714679
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctct 121  Q
    |||||||||| | |||||||||||||||||| |||||||||||||||    
T  30714725 gttgtcaaaaagctgtcacaaaatgattgtacaaatatcatttctct 30714679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 28965866 - 28965914
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||| ||||| |||||||| ||||| |||||||||||||||||    
T  28965866 gttgtcaaaaagttgtaacaaaatggttgtacaaatatcatttctctta 28965914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 11785400 - 11785353
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    ||||||||||  ||||||||||||| ||||| ||||||||||||||||    
T  11785400 gttgtcaaaaaattgtcacaaaatggttgtacaaatatcatttctctt 11785353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 31417333 - 31417368
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctct 121  Q
    ||||||| ||||||||||||||||||||||||||||    
T  31417333 gttgtcataaaatgattgtataaatatcatttctct 31417368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 9954593 - 9954547
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctct 121  Q
    |||||||||| ||||||||||| || ||||| |||||||||||||||    
T  9954593 gttgtcaaaaagttgtcacaaattggttgtacaaatatcatttctct 9954547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 30906689 - 30906735
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctct 121  Q
    |||||||||| ||||||| ||||||| |||| |||||||||||||||    
T  30906689 gttgtcaaaaagttgtcataaaatgaatgtagaaatatcatttctct 30906735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 29376741 - 29376786
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    ||||| |||| |||||||||||||| ||||| ||||||||||||||    
T  29376741 gttgttaaaaagttgtcacaaaatggttgtaaaaatatcatttctc 29376786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 32784783 - 32784738
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||| ||||| ||||||| |||||| ||||||||||||||    
T  32784783 gttgtcaaaaagttgtaacaaaataattgtacaaatatcatttctc 32784738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 1246397 - 1246429
Alignment:
Q  87 ttgtcacaaaatgattgtataaatatcatttct 119  Q
    ||||||||||||||||||| |||||||||||||    
T  1246397 ttgtcacaaaatgattgtaaaaatatcatttct 1246429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 3089017 - 3088969
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctcttag 124  Q
    ||||| ||| |||||||| ||||| ||||| ||||||||||||||||||    
T  3089017 ttgtctaaaagttgtcactaaatggttgtacaaatatcatttctcttag 3088969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 3180029 - 3180065
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  3180029 gttgtcaaaaaatgattgtacaaatatcatttctctt 3180065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 3339536 - 3339572
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  3339536 gttgtcacaaaatggttgtacaaatatcatttctctt 3339572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 12044377 - 12044329
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||| ||| ||||||| |||||  |||||||||||||||||||||||    
T  12044377 gttgtctaaaagttgtcaaaaaatagttgtataaatatcatttctctta 12044329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 15666799 - 15666847
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    ||||| |||| ||||||| |||||| ||||| |||||||||||||||||    
T  15666799 gttgttaaaaagttgtcagaaaatggttgtacaaatatcatttctctta 15666847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 19789102 - 19789150
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||| ||||| | |||||| ||||| |||||||||||||||||    
T  19789102 gttgtcaaaaagttgtaataaaatggttgtacaaatatcatttctctta 19789150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 29383602 - 29383554
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||| ||||||| ||| || ||||| |||||||||||||||||    
T  29383602 gttgtcaaaaagttgtcagaaagtggttgtacaaatatcatttctctta 29383554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 32457279 - 32457323
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    ||||||||| ||||||||||| || ||||| ||||||||||||||    
T  32457279 ttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctc 32457323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 34413137 - 34413089
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    ||||||||||  ||||  ||||||||||||| |||||||||||||||||    
T  34413137 gttgtcaaaaaattgtagcaaaatgattgtacaaatatcatttctctta 34413089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 9162110 - 9162063
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||    
T  9162110 ttgtcaaaaagttgtcacaaaatgattgtacaaatatcatttctctta 9162063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 10994178 - 10994224
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctct 121  Q
    ||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  10994178 gttgtcaaaagattgtcacaaaatggttgtacaaatatcatttctct 10994224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 8026790 - 8026827
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  8026790 gttgtcacaaattgattgtataaatatcatttctctta 8026827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 18568841 - 18568886
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||| ||| |||||||||||||| ||||||||||||||||||||    
T  18568841 gttgtccaaaagttgtcacaaaatggttgtataaatatcatttctc 18568886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 169529 - 169573
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    ||||||||| |||||||||||||| ||||| ||||||||||||||    
T  169529 ttgtcaaaaagttgtcacaaaatggttgtacaaatatcatttctc 169573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 4896526 - 4896574
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||| ||||||||||| || ||||| |||||||||||||||||    
T  4896526 gttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctctta 4896574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 11064112 - 11064160
Alignment:
Q  72 aatgttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    ||||||||||||| ||||||||||| || ||||| ||||||||||||||    
T  11064112 aatgttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctc 11064160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 23094421 - 23094374
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||| ||| ||| |||||||||||||||| ||||||||||||||||    
T  23094421 gttgtctaaaagttatcacaaaatgattgtacaaatatcatttctctt 23094374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 39010165 - 39010208
Alignment:
Q  77 tgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||    
T  39010165 tgtcaaaaagttgtcacaaaatggttgtacaaatatcatttctc 39010208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 51296215 - 51296262
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||| ||||||| ||| |||||||| ||||||||||||||||    
T  51296215 gttgtcaaaaagttgtcataaagtgattgtacaaatatcatttctctt 51296262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 47998639 - 47998593
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctct 121  Q
    |||||||||| ||||| |||||||| ||||| |||||||||||||||    
T  47998639 gttgtcaaaaagttgttacaaaatggttgtacaaatatcatttctct 47998593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 515657 - 515694
Alignment:
Q  82 aaaggttgtcacaaaatgattgtataaatatcatttct 119  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  515657 aaaggttgtcaaaaaataattgtataaatatcatttct 515694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 925089 - 925130
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcattt 117  Q
    ||||| ||| |||||||||||||| |||||||||||||||||    
T  925089 ttgtctaaaagttgtcacaaaatggttgtataaatatcattt 925130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 13252582 - 13252537
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    ||||||||||  || ||||||||||||| |||||||||||||||||    
T  13252582 gttgtcaaaaaattatcacaaaatgattatataaatatcatttctc 13252537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 22071541 - 22071496
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||| |||||||| |||| |||||| ||||||||||||||    
T  22071541 gttgtcaaaaagttgtcactaaataattgtacaaatatcatttctc 22071496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 34116567 - 34116612
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctct 121  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||    
T  34116567 ttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctct 34116612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 38864768 - 38864809
Alignment:
Q  81 aaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||| ||||||||||||| |||||| ||||||||||||||||    
T  38864768 aaaaagttgtcacaaaataattgtacaaatatcatttctctt 38864809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 39881056 - 39881101
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||| ||||| | |||||||||||| ||||||||||||||    
T  39881056 gttgtcaaaaagttgttagaaaatgattgtacaaatatcatttctc 39881101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 41262655 - 41262692
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  41262655 gttgtcacaaaataattgtacaaatatcatttctctta 41262692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 123
Target Start/End: Complemental strand, 52697509 - 52697480
Alignment:
Q  94 aaaatgattgtataaatatcatttctctta 123  Q
    ||||||||||||||||||||||||||||||    
T  52697509 aaaatgattgtataaatatcatttctctta 52697480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 3223023 - 3222987
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  3223023 gttgtcacaaattgattgtacaaatatcatttctctt 3222987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 24235353 - 24235317
Alignment:
Q  87 ttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||| |||||||| |||||||||||||||||    
T  24235353 ttgtcacaaattgattgtacaaatatcatttctctta 24235317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 31221447 - 31221411
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  31221447 gttgtcacaaattgattgtacaaatatcatttctctt 31221411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 40590646 - 40590610
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  40590646 gttgtcacaaaataattgtttaaatatcatttctctt 40590610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 44368239 - 44368275
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  44368239 gttgtcacaaattgattgtacaaatatcatttctctt 44368275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 54036555 - 54036591
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  54036555 gttgtcacaaaatggttgtacaaatatcatttctctt 54036591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 35272072 - 35272025
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||||||||||||||| || ||||| ||||||||||||||||    
T  35272072 gttgtcaaaaggttgtcacaaagtggttgtacaaatatcatttctctt 35272025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 31206877 - 31206921
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttct 119  Q
    ||||||||||  ||||||||||||||||||| |||||||||||||    
T  31206877 gttgtcaaaaatttgtcacaaaatgattgtacaaatatcatttct 31206921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 7240 - 7287
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  7240 gttgtccaaaagttgtcagaaaatgattgtacaaatatcatttctctt 7287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 43333696 - 43333743
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||| ||||||| ||||||| |||| ||||||||||||||||    
T  43333696 gttgtcaaaaagttgtcataaaatgactgtacaaatatcatttctctt 43333743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 18169201 - 18169155
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    ||||||||| ||||||||||| || ||||| ||||||||||||||||    
T  18169201 ttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctctt 18169155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 35074122 - 35074164
Alignment:
Q  81 aaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||| |||||| ||||||||||||| |||||||||||||||||    
T  35074122 aaaaagttgtcccaaaatgattgtacaaatatcatttctctta 35074164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 41877637 - 41877683
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctct 121  Q
    |||||||||||| ||||||||| || ||||| |||||||||||||||    
T  41877637 gttgtcaaaagggtgtcacaaagtggttgtacaaatatcatttctct 41877683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 43169774 - 43169816
Alignment:
Q  81 aaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||| |||||||||||||| ||||| |||||||||||||||||    
T  43169774 aaaaagttgtcacaaaatggttgtacaaatatcatttctctta 43169816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 49196740 - 49196694
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||| || |||||||||||||| ||||| ||||||||||||||||    
T  49196740 ttgtcacaaagttgtcacaaaatggttgtacaaatatcatttctctt 49196694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 462427 - 462472
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||| ||| |||||||||||||| ||||| ||||||||||||||    
T  462427 gttgtctaaaagttgtcacaaaatggttgtacaaatatcatttctc 462472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 1765438 - 1765401
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  1765438 gttgtcacaaaatgaatgtacaaatatcatttctctta 1765401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 19418183 - 19418228
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||| ||||||| |||||| ||||| ||||||||||||||    
T  19418183 gttgtcaaaaagttgtcataaaatggttgtacaaatatcatttctc 19418228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 32575424 - 32575465
Alignment:
Q  81 aaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    ||||||||||||||||||| || || ||||||||||||||||    
T  32575424 aaaaggttgtcacaaaatggttatacaaatatcatttctctt 32575465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 48405444 - 48405407
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  48405444 gttgtcacaaaatggttgtacaaatatcatttctctta 48405407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 51464298 - 51464343
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||| ||||||||||| || ||||| ||||||||||||||    
T  51464298 gttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctc 51464343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 108476 - 108428
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    ||||||||||  |||||||||| || ||||| |||||||||||||||||    
T  108476 gttgtcaaaaaattgtcacaaagtggttgtacaaatatcatttctctta 108428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 8254061 - 8254025
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  8254061 gttgtcacaaaatggttgtacaaatatcatttctctt 8254025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 11335328 - 11335376
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||| ||||| | |||||| ||||| |||||||||||||||||    
T  11335328 gttgtcaaaaagttgttagaaaatggttgtacaaatatcatttctctta 11335376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 31017421 - 31017465
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    ||||||||| ||||| | |||||||||||| ||||||||||||||    
T  31017421 ttgtcaaaaagttgttagaaaatgattgtacaaatatcatttctc 31017465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 33256342 - 33256306
Alignment:
Q  87 ttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  33256342 ttgtctcaaaatggttgtataaatatcatttctctta 33256306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 52454131 - 52454167
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  52454131 gttgtcacaaattgattgtacaaatatcatttctctt 52454167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 52564672 - 52564708
Alignment:
Q  87 ttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  52564672 ttgtcacaaaatggttgtacaaatatcatttctctta 52564708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 18373892 - 18373845
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||| ||||||| |||||||||||| ||||||||||||||||    
T  18373892 gttgtcaaaatgttgtcataaaatgattgtacaaatatcatttctctt 18373845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 31296871 - 31296918
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||| |||||||||||||| ||||| ||||||||||||||||    
T  31296871 gttgtcaaaacgttgtcacaaaatggttgtacaaatatcatttctctt 31296918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 30974015 - 30974060
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||| ||||||| |||||||||||| ||||||||||||||    
T  30974015 gttgtcaaaaagttgtcataaaatgattgtaaaaatatcatttctc 30974060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 33296097 - 33296145
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||| ||||||||||| || ||||| |||||||||||||||||    
T  33296097 gttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctctta 33296145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 33417242 - 33417274
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttc 118  Q
    |||||||||||||||||||||||||||||||||    
T  33417242 gttgtcacaaaatgattgtataaatatcatttc 33417274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 4738598 - 4738645
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||| ||||||||||| || ||||| ||||||||||||||||    
T  4738598 gttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctctt 4738645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 22353201 - 22353236
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctct 121  Q
    |||||||||||||||||||| |||||||||||||||    
T  22353201 gttgtcacaaaatgattgtacaaatatcatttctct 22353236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 2308348 - 2308394
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctct 121  Q
    |||||||||||||||||| ||| || ||||| |||||||||||||||    
T  2308348 gttgtcaaaaggttgtcaaaaattggttgtacaaatatcatttctct 2308394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 10749706 - 10749752
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||| |||||| |||||| ||||| ||||||||||||||||    
T  10749706 ttgtcaaaagattgtcataaaatggttgtacaaatatcatttctctt 10749752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 22390200 - 22390150
Alignment:
Q  72 aatgttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    ||||||||||||| ||||||| | | |||||||| ||||||||||||||||    
T  22390200 aatgttgtcaaaaagttgtcatagagtgattgtacaaatatcatttctctt 22390150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 36909869 - 36909915
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctct 121  Q
    |||||| ||| |||||||||||||| ||||| |||||||||||||||    
T  36909869 gttgtccaaaagttgtcacaaaatggttgtacaaatatcatttctct 36909915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 5455479 - 5455524
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||||||||||||||| ||  |||| ||||||||||||||    
T  5455479 gttgtcaaaaggttgtcacaaagtggatgtacaaatatcatttctc 5455524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 19529576 - 19529539
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  19529576 gttgtcacaaaatggttgtataaatatcatttttctta 19529539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 29795481 - 29795444
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  29795481 gttgtcacaaaatggttgtacaaatatcatttctctta 29795444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 39247489 - 39247534
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||| ||| |||||||||| ||||| ||||||||||||||    
T  39247489 gttgtcaaaaagttatcacaaaatggttgtacaaatatcatttctc 39247534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 4344485 - 4344449
Alignment:
Q  84 aggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  4344485 aggttgtcacaaaatggttgtacaaatatcatttctc 4344449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 6215267 - 6215307
Alignment:
Q  83 aaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||| |||||||  |||||||||||||||||||||||    
T  6215267 aaggttgtaacaaaatagttgtataaatatcatttctctta 6215307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 21805813 - 21805857
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    ||||| ||| |||||||| ||||||||||| ||||||||||||||    
T  21805813 ttgtctaaaagttgtcactaaatgattgtacaaatatcatttctc 21805857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 27307268 - 27307304
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  27307268 gttgtcacaaattgattgtacaaatatcatttctctt 27307304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 30413752 - 30413800
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||| |||||  ||||||| ||||| |||||||||||||||||    
T  30413752 gttgtcaaaaagttgtagcaaaatggttgtacaaatatcatttctctta 30413800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 35171264 - 35171300
Alignment:
Q  87 ttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  35171264 ttgtcacaaaatggttgtacaaatatcatttctctta 35171300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 42607557 - 42607593
Alignment:
Q  87 ttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||||| |||||| |||||||||||||||||    
T  42607557 ttgtcacaaaataattgtacaaatatcatttctctta 42607593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 42665838 - 42665886
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||| ||||| | ||| |||||||| |||||||||||||||||    
T  42665838 gttgtcaaaaagttgtaataaagtgattgtacaaatatcatttctctta 42665886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 44085307 - 44085271
Alignment:
Q  87 ttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||||| |||||||||||||||||| |||||    
T  44085307 ttgtcacaaaataattgtataaatatcatttatctta 44085271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 44105129 - 44105161
Alignment:
Q  87 ttgtcacaaaatgattgtataaatatcatttct 119  Q
    |||||||||||||||||||||||||| ||||||    
T  44105129 ttgtcacaaaatgattgtataaatataatttct 44105161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 6161993 - 6161947
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctct 121  Q
    |||||||||||||||||| |||||| ||||| |||||||||||||||    
T  6161993 gttgtcaaaaggttgtcataaaatggttgtacaaatatcatttctct 6161947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 6849287 - 6849332
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||| ||| |||||||||||||| ||||||||||||||||||||    
T  6849287 gttgtctaaaagttgtcacaaaatggttgtataaatatcatttctc 6849332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 36064074 - 36064029
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctct 121  Q
    ||||| ||| |||||||||||||||||||| |||||||||||||||    
T  36064074 ttgtccaaaagttgtcacaaaatgattgtacaaatatcatttctct 36064029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 26871094 - 26871046
Alignment:
Q  72 aatgttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    ||||||||||||| ||||||| ||| |||||||| ||||||||||||||    
T  26871094 aatgttgtcaaaaagttgtcataaagtgattgtacaaatatcatttctc 26871046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 39021469 - 39021517
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||| ||| |||||||||| ||||| |||||||||||||||||    
T  39021469 gttgtcaaaaagttatcacaaaatggttgtacaaatatcatttctctta 39021517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 44380647 - 44380687
Alignment:
Q  82 aaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  44380647 aaaggttgtcacaaaatggttgtacaaatatcatttctctt 44380687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 21418618 - 21418665
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||||||||||| ||| || ||||| ||||||||||||||||    
T  21418618 gttgtcaaaaggttgtcagaaagtggttgtacaaatatcatttctctt 21418665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 40719669 - 40719716
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||||||||| | |||||| ||||| ||||||||||||||||    
T  40719669 gttgtcaaaaggttgttagaaaatggttgtacaaatatcatttctctt 40719716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 45101441 - 45101394
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||| ||||||||||| || ||||| ||||||||||||||||    
T  45101441 gttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctctt 45101394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 26294233 - 26294187
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    ||||||||| |||||||||||||| |||||  |||||||||||||||    
T  26294233 ttgtcaaaaagttgtcacaaaatggttgtaccaatatcatttctctt 26294187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 26307490 - 26307444
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    ||||||||| |||||||||||||| |||||  |||||||||||||||    
T  26307490 ttgtcaaaaagttgtcacaaaatggttgtaccaatatcatttctctt 26307444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 34473993 - 34473947
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||| |||||||||| ||| |||| ||||||||||||||||    
T  34473993 ttgtcaaaagattgtcacaaagtgaatgtacaaatatcatttctctt 34473947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 34970252 - 34970206
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctct 121  Q
    |||||||||| ||||| |||||| ||||||| |||||||||||||||    
T  34970252 gttgtcaaaaagttgttacaaaaggattgtacaaatatcatttctct 34970206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 42443149 - 42443103
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctct 121  Q
    |||||| ||| |||||||| ||||||||||| |||||||||||||||    
T  42443149 gttgtctaaaagttgtcactaaatgattgtacaaatatcatttctct 42443103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 6806942 - 6806909
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttct 119  Q
    |||||||||||||||||||| |||||||||||||    
T  6806942 gttgtcacaaaatgattgtacaaatatcatttct 6806909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 13884186 - 13884231
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    ||||||| || ||||||| |||||||||||| ||||||||||||||    
T  13884186 gttgtcacaaagttgtcaaaaaatgattgtacaaatatcatttctc 13884231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 39719278 - 39719323
Alignment:
Q  79 tcaaaaggttgtcacaaaatgattgtataaatatcatttctcttag 124  Q
    |||||| ||||||||||| |||||||| ||||||||||||| ||||    
T  39719278 tcaaaaagttgtcacaaattgattgtacaaatatcatttcttttag 39719323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 41344695 - 41344740
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||| ||| ||||||| |||||||| ||||||||||||||    
T  41344695 gttgtcaaaaagttatcacaaactgattgtacaaatatcatttctc 41344740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 43873717 - 43873762
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    ||||||||||  ||||||||||||| ||||| ||||||||||||||    
T  43873717 gttgtcaaaaaattgtcacaaaatggttgtacaaatatcatttctc 43873762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 7596918 - 7596962
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    ||||||| | ||||||||||| |||||||| ||||||||||||||    
T  7596918 ttgtcaagaagttgtcacaaagtgattgtacaaatatcatttctc 7596962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 11223885 - 11223933
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||| | ||||||||||||||  |||| |||||||||||||||||    
T  11223885 gttgtcaagaagttgtcacaaaatggatgtacaaatatcatttctctta 11223933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 14710919 - 14710955
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  14710919 gttgtcacaaaatgattgtacaaatatcatttatctt 14710955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 21273737 - 21273781
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    ||||||| | |||||||||||||| ||||| ||||||||||||||    
T  21273737 ttgtcaagaagttgtcacaaaatggttgtacaaatatcatttctc 21273781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 22852865 - 22852913
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||| | ||||||||||| || ||||| |||||||||||||||||    
T  22852865 gttgtcaagaagttgtcacaaagtggttgtacaaatatcatttctctta 22852913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 36497706 - 36497658
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||| ||| |||||||||||||  ||||| |||||||||||||||||    
T  36497706 gttgtctaaaagttgtcacaaaatagttgtacaaatatcatttctctta 36497658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 40413375 - 40413411
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  40413375 gttgtcacaaaataattgtacaaatatcatttctctt 40413411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 40842059 - 40842011
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||| ||| ||||||| || ||||| |||||||||||||||||    
T  40842059 gttgtcaaaaagttatcacaaagtggttgtacaaatatcatttctctta 40842011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 44086545 - 44086585
Alignment:
Q  81 aaaaggttgtcacaaaatgattgtataaatatcatttctct 121  Q
    |||||||||||| ||||||||| || |||||||||||||||    
T  44086545 aaaaggttgtcataaaatgattttacaaatatcatttctct 44086585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 8897427 - 8897381
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctct 121  Q
    |||||||||||||||||| |||||| ||||| |||||||||||||||    
T  8897427 gttgtcaaaaggttgtcataaaatggttgtacaaatatcatttctct 8897381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 122
Target Start/End: Complemental strand, 7927385 - 7927353
Alignment:
Q  90 tcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||||||||||||||||||||||||||    
T  7927385 tcacaaaatgattgtataaatatcatttctctt 7927353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 14914417 - 14914370
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||| ||| |||||||||||||| ||||| ||||||||||||||||    
T  14914417 gttgtccaaaagttgtcacaaaatggttgtacaaatatcatttctctt 14914370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 38500988 - 38500941
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    ||||||||||  ||||||||||||| ||||| ||||||||||||||||    
T  38500988 gttgtcaaaaaattgtcacaaaatggttgtacaaatatcatttctctt 38500941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 3771032 - 3771078
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctct 121  Q
    |||||||||| |||||||||||||| ||||| | |||||||||||||    
T  3771032 gttgtcaaaaagttgtcacaaaatggttgtacagatatcatttctct 3771078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 27440513 - 27440479
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||||||||||||| ||||||||||||||    
T  27440513 gttgtcacaaaatgattgtacaaatatcatttctc 27440479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Complemental strand, 41460150 - 41460116
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctc 120  Q
    ||||||| |||||||||||||||||||||||||||    
T  41460150 gttgtcaaaaaatgattgtataaatatcatttctc 41460116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 3109609 - 3109658
Alignment:
Q  72 aatgttgtca-aaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||| ||| ||||||||||| |||||||| ||||||||||||||    
T  3109609 aatgttgtcacaaaagttgtcacaaattgattgtacaaatatcatttctc 3109658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 12718406 - 12718451
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||| ||||||||||| || ||||| ||||||||||||||    
T  12718406 gttgtcaaaaagttgtcacaaattggttgtacaaatatcatttctc 12718451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 12779632 - 12779677
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||| ||||||||||| || ||||| ||||||||||||||    
T  12779632 gttgtcaaaaagttgtcacaaattggttgtacaaatatcatttctc 12779677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 34381057 - 34381012
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||| ||||||||||| || ||||| ||||||||||||||    
T  34381057 gttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctc 34381012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 39595317 - 39595272
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||| ||||||||||| || ||||| ||||||||||||||    
T  39595317 gttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctc 39595272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 42699098 - 42699057
Alignment:
Q  79 tcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||| |||||||||||||| ||||| ||||||||||||||    
T  42699098 tcaaaaagttgtcacaaaatggttgtacaaatatcatttctc 42699057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 11148560 - 11148508
Alignment:
Q  72 aatgttgtca-aaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||| ||| ||||||| ||| |||||||| |||||||||||||||||    
T  11148560 aatgttgtcacaaaagttgtcaaaaattgattgtacaaatatcatttctctta 11148508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 26660437 - 26660485
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||| | ||||||||||||||  |||| |||||||||||||||||    
T  26660437 gttgtcaagaagttgtcacaaaatggatgtacaaatatcatttctctta 26660485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 26932029 - 26932077
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||| | ||||||||||||||  |||| |||||||||||||||||    
T  26932029 gttgtcaagaagttgtcacaaaatggatgtacaaatatcatttctctta 26932077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 30530600 - 30530646
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctct 121  Q
    |||||| ||| |||||||||||||| |||||||||||||||||||||    
T  30530600 gttgtctaaaagttgtcacaaaatggttgtataaatatcatttctct 30530646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 50226905 - 50226953
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||| ||||||||||| || ||||| |||||||||||||||||    
T  50226905 gttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctctta 50226953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 50797825 - 50797789
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||||||||||||| ||||||||||||||||    
T  50797825 gttgtcacaaaatgattgtacaaatatcatttctctt 50797789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 52715023 - 52714979
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttct 119  Q
    ||||| |||| |||||||||||||||||||| |||||||||||||    
T  52715023 gttgtaaaaaagttgtcacaaaatgattgtacaaatatcatttct 52714979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 11812432 - 11812385
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    ||||||||||  ||||||||||||||||||| || |||||||||||||    
T  11812432 gttgtcaaaaaattgtcacaaaatgattgtacaactatcatttctctt 11812385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 120
Target Start/End: Original strand, 16836136 - 16836175
Alignment:
Q  81 aaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||| |||||||||||||||||||| ||||||||||||||    
T  16836136 aaaaagttgtcacaaaatgattgtacaaatatcatttctc 16836175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 18959048 - 18959005
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcatttct 119  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||    
T  18959048 ttgtcaaaaagttgtaacaaaatggttgtataaatatcatttct 18959005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Complemental strand, 40610274 - 40610227
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    ||||||||||  |||||| ||||||| |||||||||||||||||||||    
T  40610274 gttgtcaaaaaattgtcataaaatgaatgtataaatatcatttctctt 40610227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 34974786 - 34974820
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctc 120  Q
    |||||||||||||| ||||||||||||||||||||    
T  34974786 gttgtcacaaaatggttgtataaatatcatttctc 34974820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 39669851 - 39669805
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctct 121  Q
    ||||||||||  ||||||||||||| ||||| |||||||||||||||    
T  39669851 gttgtcaaaaaattgtcacaaaatggttgtacaaatatcatttctct 39669805  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 44672057 - 44672103
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    ||||||||| ||||| | |||||||||||| ||||||||||||||||    
T  44672057 ttgtcaaaaagttgttaaaaaatgattgtacaaatatcatttctctt 44672103  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 123
Target Start/End: Original strand, 21446252 - 21446281
Alignment:
Q  94 aaaatgattgtataaatatcatttctctta 123  Q
    ||||||||||||||||||||||||||||||    
T  21446252 aaaatgattgtataaatatcatttctctta 21446281  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 25302675 - 25302716
Alignment:
Q  81 aaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||||||||| || ||||| ||||||||||||||||    
T  25302675 aaaaggttgtcacaaagtggttgtacaaatatcatttctctt 25302716  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 27687545 - 27687582
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctta 123  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  27687545 gttgtcacaaaatggttgtacaaatatcatttctctta 27687582  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 51038011 - 51037978
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttct 119  Q
    ||||||| ||||||||||||||||||||||||||    
T  51038011 gttgtcaaaaaatgattgtataaatatcatttct 51037978  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 9011679 - 9011643
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  9011679 gttgtcacaaaatggttgtacaaatatcatttctctt 9011643  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 9882685 - 9882729
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttct 119  Q
    |||||||||| |||||||||||||  ||||| |||||||||||||    
T  9882685 gttgtcaaaatgttgtcacaaaatagttgtacaaatatcatttct 9882729  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 13078870 - 13078842
Alignment:
Q  93 caaaatgattgtataaatatcatttctct 121  Q
    |||||||||||||||||||||||||||||    
T  13078870 caaaatgattgtataaatatcatttctct 13078842  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 40596080 - 40596116
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  40596080 gttgtcacaaaatggttgtacaaatatcatttctctt 40596116  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 40612148 - 40612112
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  40612148 gttgtcacaaaatggttgtacaaatatcatttctctt 40612112  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 42256494 - 42256458
Alignment:
Q  86 gttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  42256494 gttgtcacaaaatggttgtacaaatatcatttctctt 42256458  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 50528084 - 50528128
Alignment:
Q  76 ttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    ||||| ||| ||||||||||| |||||||| ||||||||||||||    
T  50528084 ttgtctaaaagttgtcacaaattgattgtacaaatatcatttctc 50528128  T

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Target: scaffold0011 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 122
Target Start/End: Original strand, 219690 - 219737
Alignment:
Q  75 gttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctctt 122  Q
    |||||||||| ||||||||||| || ||||| ||||||||||||||||    
T  219690 gttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctctt 219737  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 6475 - 6427
Alignment:
Q  72 aatgttgtcaaaaggttgtcacaaaatgattgtataaatatcatttctc 120  Q
    ||||||||||||| ||||||| ||||||  |||| ||||||||||||||    
T  6475 aatgttgtcaaaaagttgtcataaaatggatgtacaaatatcatttctc 6427  T

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