View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4134_high_1 (Length: 634)
Name: NF4134_high_1
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 18 - 626
Target Start/End: Original strand, 53514380 - 53514983
Alignment:
| Q |
18 |
atagatatcacacaaatactcatacctattggtatggaggtaatatcagcaattctccgttcaatattctggacaattttgtcctttcctctatccagaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53514380 |
atagatatcacacaaatactcatacctattggtacggaggtaatatcagcaattctccgttcaatattctggacaattttgtcctttcctctatccagaa |
53514479 |
T |
|
| Q |
118 |
acattcctgaactagttcgagagctacacaggcaggggatatatcaaaagtaatgcattaccactggacacatttctcaagaaaatgtacatgaaaaaga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53514480 |
acattcctgaactagttcgagagctacacaggcaggggatatatcaaaagt-atgcattaccactggacacatttctcaagaaaatgtacatgaaaaaga |
53514578 |
T |
|
| Q |
218 |
aaatgatctacaattattggaaccaatacnnnnnnnncacaaacataggcaaacctgctttctttaacctctccagttacaccatcgacaacaagtgatc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
53514579 |
aaatgatctacaattattggaaccaatacaaaaaaaacacaagcataggcaaacctgctttctttaacctctccagttacgccatcgacaacaagtgatc |
53514678 |
T |
|
| Q |
318 |
ttgccatgaaaggcttggcaagattgatcaaatgctcacattcttcttttgactgttcaaaatgataggcaaaatggaggttttatataatacaatatag |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
53514679 |
ttgccatgaaaggcttggcaagattgatcaaatgctcacattcttcttttgactgttcaaaatgataggcaaaatggaggttt----taatacaatatag |
53514774 |
T |
|
| Q |
418 |
attccaacagtttaagatctctctcatttnnnnnnnntataaaaagaaagatctccattcaaactctggagtctttcggaaagtttaagtttcctgcaat |
517 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53514775 |
attccaacagtttaagatctctctcatttaaaaaaaatataaaaagaaagatctccactcaaactctggagtctttcggaaagtttaagtttcctgcaat |
53514874 |
T |
|
| Q |
518 |
ctgaatatttcgtgtatgaatgtgaatactagattttcttttatcactaaccaccatgaaaaacctctatcgtcatataatttaattttccatgagccta |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
53514875 |
ctgaatatttcgtgtatgaatgtgaatactagattttcttttatcactaaccaccatgaaaaacctctattgtcatataatttaattttccatgagccta |
53514974 |
T |
|
| Q |
618 |
gcctatgct |
626 |
Q |
| |
|
||||||||| |
|
|
| T |
53514975 |
gcctatgct |
53514983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 266 - 626
Target Start/End: Original strand, 53510938 - 53511282
Alignment:
| Q |
266 |
gcaaacctgctttctttaacctctccagttacaccatcgacaacaagtgatcttgccatgaaaggcttggcaagattgatcaaatgctcacattcttctt |
365 |
Q |
| |
|
||||||||||||||| || ||| |||||| | ||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53510938 |
gcaaacctgctttctctaccctttccagtcaagccatcaacaacaagcgatcttgtcatgaaaggcttggcaagattgatcaaatgctcacattcttctt |
53511037 |
T |
|
| Q |
366 |
ttgactgttcaaaatgataggcaaaatggaggttttatataatacaatatagattccaacagtttaagatctctctcatttnnnnnnnntataaaaagaa |
465 |
Q |
| |
|
||||||||||||||||||||| ||| |||| ||||| |||||||||| ||||||||||||||||||||||||||||| |||| | |
|
|
| T |
53511038 |
ttgactgttcaaaatgataggaaaagtggacatttta----atacaatataaattccaacagtttaagatctctctcattt------------aaaacta |
53511121 |
T |
|
| Q |
466 |
agatctccattcaaactctggagtctttcggaaagtttaagtttcctgcaatctgaatatttcgtgtatgaatgtgaatactagattttcttttatcact |
565 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||| | |
|
|
| T |
53511122 |
agatctccactcaaactctggagtctttcagaaagttcaagtttcctgcaatctgaatattccatgtatgaatatgaatactagattttcttttatcatt |
53511221 |
T |
|
| Q |
566 |
aaccaccatgaaaaacctctatcgtcatataatttaattttccatgagcctagcctatgct |
626 |
Q |
| |
|
||| ||||||||||||||||||| | |||| ||||||||||||||| ||||||||||||| |
|
|
| T |
53511222 |
aactaccatgaaaaacctctatctttgtatagtttaattttccatgaccctagcctatgct |
53511282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 28 - 431
Target Start/End: Original strand, 53548433 - 53548837
Alignment:
| Q |
28 |
cacaaatactcatacctattggtatggaggtaatatcagcaattctccgttcaatattctggacaattttgtcctttcctctatccagaaacattcctga |
127 |
Q |
| |
|
|||||| ||||||||||| ||||||| |||||| |||||||||||||| |||||||||||||| |||||||||||||||||| | ||||||||||||||| |
|
|
| T |
53548433 |
cacaaaaactcatacctactggtatgaaggtaaaatcagcaattctcctttcaatattctggataattttgtcctttcctctcttcagaaacattcctga |
53548532 |
T |
|
| Q |
128 |
actagttcgagagctacacaggcaggggatatatcaaaagtaatgcattaccactggacac--atttctcaagaaaatgtacatg------aaaaagaaa |
219 |
Q |
| |
|
|||||||||| || ||||| |||||||||||| | ||||||||||||||||| ||||| | ||||||||||| || ||| ||||| ||| |
|
|
| T |
53548533 |
actagttcgaaccct--acaggaaggggatatatctagagtaatgcattaccactagacactagtctctcaagaaaaggtttatggaaagaaaaaaaaaa |
53548630 |
T |
|
| Q |
220 |
atgatctacaattattggaaccaatacnnnnnnnncacaaacataggcaaacctgctttctttaacctctccagttacaccatcgacaacaagtgatctt |
319 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| || ||||||||||||||||| || || |||||| | |||||| ||| |||| || |
|
|
| T |
53548631 |
atgatctacaattattggaaccgatac-aaaaaaacacaagcaaaggcaaacctgctttctgtactctttccagtcttgctatcgacgacacttgatttt |
53548729 |
T |
|
| Q |
320 |
gccatgaaaggcttggcaagattgatcaaatgctcacattcttcttttgactgttcaaaatgataggcaaaatggaggttttatataatacaatatagat |
419 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||| | ||| || ||| |||||||||||| || |
|
|
| T |
53548730 |
gccaagaaaggcttggccagattgatcaaatgctcacattcttctttggactgttcacaatggtaggaagaattgacattt----taatacaatataaat |
53548825 |
T |
|
| Q |
420 |
tccaacagttta |
431 |
Q |
| |
|
|||||||||||| |
|
|
| T |
53548826 |
tccaacagttta |
53548837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 53510730 - 53510929
Alignment:
| Q |
18 |
atagatatcacacaaata-ctcatacctattggtatggaggtaatatcagcaattctccgttcaatattctggacaattttgtcctttcctctatccaga |
116 |
Q |
| |
|
|||||||||||||||| | |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53510730 |
atagatatcacacaaaaaactcatacctactggtatggaggtaatatcagcaattctctgttcaatattctggacaattttgtcctttcctctctccaga |
53510829 |
T |
|
| Q |
117 |
aacattcctgaactagttcgagagctacacaggcaggggatatatcaaaagtaatgcattaccact-ggacac-att-tctcaagaaaatgtacatgaaa |
213 |
Q |
| |
|
||| |||||||||||||||||| ||| ||| ||||||||||||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |
|
|
| T |
53510830 |
aaccttcctgaactagttcgagcgct--acatgcaggggatatattaaaagtaatgcattaccactaagacactattctctcaagaaaatgtacatgaaa |
53510927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 27 - 188
Target Start/End: Original strand, 53524855 - 53525014
Alignment:
| Q |
27 |
acacaaatactcatacctattggtatggaggtaatatcagcaattctccgttcaatattctggacaattttgtcctttcctctatccagaaacattcctg |
126 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||| |||||||| |||||| |
|
|
| T |
53524855 |
acacaaaaactcatacctattggtatggaggtaatatcagcaattctccgttcaacattctgcacaattttgtcttttcctctctccagaaatgttcctg |
53524954 |
T |
|
| Q |
127 |
aactagttcgagagctacacaggcaggggatatatcaaaagtaatgcattaccactggacac |
188 |
Q |
| |
|
||||||||||| ||| ||| ||| |||||||| |||||||||||||||||| || ||||| |
|
|
| T |
53524955 |
aactagttcgaacgct--acatgcatgggatataacaaaagtaatgcattaccgctcgacac |
53525014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 255 - 395
Target Start/End: Original strand, 53525047 - 53525187
Alignment:
| Q |
255 |
cacaaacataggcaaacctgctttctttaacctctccagttacaccatcgacaacaagtgatcttgccatgaaaggcttggcaagattgatcaaatgctc |
354 |
Q |
| |
|
||||| |||||||||||||| || | || ||| ||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
53525047 |
cacaagcataggcaaacctgtttagtataccctgtccggttacgccatcgacaacaagtgacctttgcatgaaaggcttggcaagattgatcaaatgctc |
53525146 |
T |
|
| Q |
355 |
acattcttcttttgactgttcaaaatgataggcaaaatgga |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53525147 |
acattcttcttttgactgttcaaaatgataggcagaatgga |
53525187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 312 - 395
Target Start/End: Original strand, 20197301 - 20197384
Alignment:
| Q |
312 |
gtgatcttgccatgaaaggcttggcaagattgatcaaatgctcacattcttcttttgactgttcaaaatgataggcaaaatgga |
395 |
Q |
| |
|
|||||||| ||| | |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20197301 |
gtgatctttccaagtaaggcttgccaagtttgatcaaatgctcacattcttcttttgactgttcaaaatgataggcataatgga |
20197384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 20197015 - 20197167
Alignment:
| Q |
23 |
tatcacacaaatactcatacctattggtatggaggtaatatcagcaattctccgttcaatattctggacaattttgtcctttcctctatccagaaacatt |
122 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| ||||||||| ||||||| | |||||||||| || |||||| ||||||||||| || | | || |
|
|
| T |
20197015 |
tatcacacaaaatctcatacctactggtatggagataatatcaggaattctctgctcaatattcttgataattttatcctttcctctcctcaaagtcctt |
20197114 |
T |
|
| Q |
123 |
cctgaactagttcgagagctacacaggcaggggatatatcaaaagtaatgcatta |
177 |
Q |
| |
|
|||||||||||||| ||| | ||| || |||||||||||||||||||||||| |
|
|
| T |
20197115 |
tctgaactagttcgaaggct--ataggtagaggatatatcaaaagtaatgcatta |
20197167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 499 - 626
Target Start/End: Original strand, 53525323 - 53525444
Alignment:
| Q |
499 |
agtttaagtttcctgcaatctgaatatttcgtgtatgaatgtgaatactagattttcttttatcactaaccaccatgaaaaacctctatcgtcatataat |
598 |
Q |
| |
|
|||| |||||| |||||||||||||||| | ||||||||| |||||||||||||||| | |||||||| ||||| |||||||| || || ||| |
|
|
| T |
53525323 |
agttcaagtttactgcaatctgaatattccatgtatgaatac-----ctagattttcttttat-attaaccacccagaaaaccctctatcttcgtacaat |
53525416 |
T |
|
| Q |
599 |
ttaattttccatgagcctagcctatgct |
626 |
Q |
| |
|
||||||| |||||||||||||||||||| |
|
|
| T |
53525417 |
ttaatttcccatgagcctagcctatgct |
53525444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 566 - 626
Target Start/End: Original strand, 53548992 - 53549052
Alignment:
| Q |
566 |
aaccaccatgaaaaacctctatcgtcatataatttaattttccatgagcctagcctatgct |
626 |
Q |
| |
|
||||||| ||| |||||||||| ||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
53548992 |
aaccacccagaacaacctctatcttcatacaatttagttttccatgagcctagcctatgct |
53549052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 590 - 626
Target Start/End: Original strand, 20197525 - 20197561
Alignment:
| Q |
590 |
tcatataatttaattttccatgagcctagcctatgct |
626 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
20197525 |
tcatataacttaattttccatgagcatagcctatgct |
20197561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 331 - 427
Target Start/End: Complemental strand, 16608492 - 16608400
Alignment:
| Q |
331 |
cttggcaagattgatcaaatgctcacattcttcttttgactgttcaaaatgataggcaaaatggaggttttatataatacaatatagattccaacag |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| ||| || ||| |||||||||||| |||||||||| |
|
|
| T |
16608492 |
cttggcaagattgatcaaatgctcacattcttattttgattgtacaaaatgataggcataatagacattt----taatacaatataaattccaacag |
16608400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University