View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4134_high_10 (Length: 429)
Name: NF4134_high_10
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 415
Target Start/End: Original strand, 27404588 - 27404986
Alignment:
| Q |
16 |
ctgtgtttaattttgatgtgatttttaggtgataaactagttcagtcttctctttttggtcaaattatacattttgttgagtattttaagcctaattatt |
115 |
Q |
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| T |
27404588 |
ctgtgtttaattttgttgagatttttaggtgataaactagttcagtcttctctttttggtcaaattatacattttgttgagtattttaagcctaattatt |
27404687 |
T |
|
| Q |
116 |
tagcattgtcatccatattgaagcatcaataccttatctttatgcatagatattgatagaatcatgtgtaaatacaggtgactggaagttttgctgcaca |
215 |
Q |
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| T |
27404688 |
taacaatttcatccatattgaagcatcaataccttgtctttatgcatagatattgatagattcatgtgtaaatacaggtgaccggaagttttgctgcaca |
27404787 |
T |
|
| Q |
216 |
cggatcaaacatgaaaaggccggagcagtggaatgctttgtatgaagaaagaggttaacggaagaaacaagaacaactcaattaatttatttagattaca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
27404788 |
cggatcaaacatgaaaaggccggagcagtggaatgctttgtacggagaaagaggttaaaggaagaaacaagaacaactcaattaatttatttagattgcg |
27404887 |
T |
|
| Q |
316 |
gaaaactaagtttaaatatgtaaatatcaatattcatccaaagaaagaatcgatcattaagcagagttattgaactcaaagaaagtaggagtaaattatg |
415 |
Q |
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| T |
27404888 |
gaaaac-aagtttaaatatgtaaatatcaatattcatccaaagaaagaatcgatcattaagtagagttattgaacccaaagaaagtacgagtaaattatg |
27404986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 45999902 - 46000019
Alignment:
| Q |
154 |
tttatgcatagatattgatagaatcatgtgtaaatacaggtgactggaagttttgctgcacacggatcaaacatgaaaaggccggagcagtggaatgctt |
253 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| | ||||||| |||| ||| | || ||||||||| || |
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| T |
45999902 |
tttatgcatagatattgatagatgcatgtgtaaatacaggtaactgcaagttttgctgcagaaggatcaacaatgagcaggttgaaggagtggaatgatt |
46000001 |
T |
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| Q |
254 |
tgtatgaagaaagaggtt |
271 |
Q |
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|||||| |||| |||||| |
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| T |
46000002 |
tgtatggagaaggaggtt |
46000019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 149 - 282
Target Start/End: Original strand, 44937283 - 44937416
Alignment:
| Q |
149 |
ttatctttatgcatagatattgatagaatcatgtgtaaatacaggtgactggaagttttgctgcacacggatcaaacatgaaaaggccggagcagtggaa |
248 |
Q |
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|||| |||| ||||||| |||||| || |||||||||||||||||||||| ||||||||||||| | ||||||| |||| ||| | || | ||||| |
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| T |
44937283 |
ttatttttaggcatagaaattgatggatgcatgtgtaaatacaggtgactgcaagttttgctgcagaaggatcaataatgaccaggttgaaggaatggaa |
44937382 |
T |
|
| Q |
249 |
tgctttgtatgaagaaagaggttaacggaagaaa |
282 |
Q |
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| T |
44937383 |
tgatttgtatggagaaggaggttcaaggaagaaa |
44937416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 312
Target Start/End: Original strand, 44928384 - 44928512
Alignment:
| Q |
184 |
taaatacaggtgactggaagttttgctgcacacggatcaaacatgaaaaggccggagcagtggaatgctttgtatgaagaaagaggttaacggaagaaac |
283 |
Q |
| |
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|||||||||||| ||| ||||| |||| || | |||||||| ||||||| || |||||| |||||| |||||||| |||| |||||| | |||||||| |
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| T |
44928384 |
taaatacaggtggctgcaagttatgctacagaaggatcaaatatgaaaatgctggagcaatggaataatttgtatggagaaggaggttcaaggaagaaag |
44928483 |
T |
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| Q |
284 |
aagaacaactcaattaatttatttagatt |
312 |
Q |
| |
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| || || |||| ||| || ||||||||| |
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| T |
44928484 |
aggagcagctcagttatttcatttagatt |
44928512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 312
Target Start/End: Original strand, 45990457 - 45990614
Alignment:
| Q |
154 |
tttatgcatagatattgatagaatcatgtgtaaatacaggtgactggaagttttgctgcacacggatcaaacatgaaaaggccg-gagcagtggaatgct |
252 |
Q |
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|||||||||||| ||||||||| ||||| ||||| |||||| ||| ||||||||||||| | ||||||| ||||| ||| | ||| ||||||||| | |
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| T |
45990457 |
tttatgcatagaaattgatagatgcatgt-taaatgcaggtggctgcaagttttgctgcagaaggatcaatgatgaacaggttgagag-agtggaatgat |
45990554 |
T |
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| Q |
253 |
ttgtatgaagaaagaggttaacggaagaaacaagaacaactcaattaatttatttagatt |
312 |
Q |
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||||||| |||| |||||| | |||||||| | || || |||| ||| ||| |||||||| |
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| T |
45990555 |
ttgtatggagaaggaggttcaaggaagaaagaggagcagctcagttattttctttagatt |
45990614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 411
Target Start/End: Original strand, 44928545 - 44928573
Alignment:
| Q |
383 |
tattgaactcaaagaaagtaggagtaaat |
411 |
Q |
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| T |
44928545 |
tattgaactcaaagaaagtaggagtaaat |
44928573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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