View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4134_high_11 (Length: 425)
Name: NF4134_high_11
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 416
Target Start/End: Original strand, 36164213 - 36164613
Alignment:
| Q |
17 |
atttagaactactaatcctaaaggtttagcctttagcaacgtggtcacattacataaaataagaatctgtgactaacgcagaataatggtatcttggcct |
116 |
Q |
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| T |
36164213 |
atttagaactactaatcctaaaggtttagcctttagcaacgtggtcacattacataaaataagaatctgtgactagcgcagaataatggtatcttggcct |
36164312 |
T |
|
| Q |
117 |
ttaatcaaacagtgtatatnnnnnnnttagacaccaaatgacatgatgggtcatttaattttgttttgcattagtattagcatcttatttgtctcatatc |
216 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36164313 |
ttaatcaaacagtgtatataaaaaaattagacaccaaatgacatgatgggtcatttaattttgttttgcattagtattagcatcttatttgtctcatatc |
36164412 |
T |
|
| Q |
217 |
aaagtttnnnnnnnnnn-tcaccttgatcatctttactgctcaaattaccctaactaactgccccatatataaatcatcgtattgattggaatggtcaat |
315 |
Q |
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| T |
36164413 |
aaagttaaaaaaaaaaaatcaccttgatcatctttactgctcaaattaccctaactaactgccccatatataaatcatcgtattgattggaatggtcaat |
36164512 |
T |
|
| Q |
316 |
attttggcacttttgtttgggattgtcatgacatggaaaacttttatcttttgcttttacgccatggctctgcctattaccgttgggaccttctattcat |
415 |
Q |
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| T |
36164513 |
attttggcacttttgtttgggattgtcatgacatggaaaacttttatcttttgcttttacgccatggctctgcctattaccgttgggaccttctattcat |
36164612 |
T |
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| Q |
416 |
t |
416 |
Q |
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| T |
36164613 |
t |
36164613 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 25725046 - 25725107
Alignment:
| Q |
162 |
atgggtcatttaattttgttttgcattagtattagcatcttatttgtctcatatcaaagttt |
223 |
Q |
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|||||||| | ||||||||||||| |||||| ||||||||||||| | |||||||||||||| |
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| T |
25725046 |
atgggtcactcaattttgttttgccttagtactagcatcttatttatttcatatcaaagttt |
25725107 |
T |
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