View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4134_high_12 (Length: 402)

Name: NF4134_high_12
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4134_high_12
NF4134_high_12
[»] chr7 (21 HSPs)
chr7 (8-389)||(24035694-24036075)
chr7 (21-386)||(15443910-15444281)
chr7 (124-386)||(23993481-23993749)
chr7 (136-386)||(24002145-24002401)
chr7 (251-386)||(24010329-24010464)
chr7 (21-386)||(15508692-15509063)
chr7 (250-386)||(24016734-24016870)
chr7 (266-386)||(26256721-26256841)
chr7 (250-327)||(26217972-26218049)
chr7 (250-327)||(26230222-26230299)
chr7 (250-327)||(26237619-26237696)
chr7 (21-92)||(24010623-24010693)
chr7 (273-343)||(24031244-24031314)
chr7 (21-85)||(24011614-24011678)
chr7 (248-323)||(14076687-14076762)
chr7 (248-323)||(14386715-14386790)
chr7 (264-323)||(22028637-22028696)
chr7 (248-323)||(22070120-22070195)
chr7 (252-321)||(1985945-1986014)
chr7 (263-364)||(22100461-22100562)
chr7 (263-323)||(22063651-22063711)
[»] chr1 (2 HSPs)
chr1 (248-343)||(4366481-4366576)
chr1 (263-321)||(50645486-50645544)
[»] chr4 (6 HSPs)
chr4 (260-323)||(6392833-6392896)
chr4 (263-324)||(829598-829659)
chr4 (266-323)||(837785-837842)
chr4 (273-343)||(23840664-23840734)
chr4 (253-323)||(53774849-53774919)
chr4 (263-323)||(6372454-6372514)
[»] chr8 (1 HSPs)
chr8 (273-343)||(11338587-11338657)
[»] chr6 (4 HSPs)
chr6 (283-337)||(19746715-19746769)
chr6 (282-340)||(34861891-34861949)
chr6 (248-321)||(17369675-17369748)
chr6 (273-337)||(33576165-33576229)
[»] scaffold0867 (1 HSPs)
scaffold0867 (263-364)||(4670-4771)
[»] chr5 (1 HSPs)
chr5 (281-334)||(23086780-23086833)
[»] chr2 (2 HSPs)
chr2 (263-300)||(25377106-25377143)
chr2 (263-323)||(554485-554545)


Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 389
Target Start/End: Complemental strand, 24036075 - 24035694
Alignment:
Q  8 tgagatgaatccgaataagtgaacatcaaagagaaacttactctcaatcaaggaactgaaaccaaactttctacgtaaaccattgcctgatcgaaccagt 107  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24036075 tgagatgaatctgaataagtgaacatcaaagtgaaacttactctcaatcaaggaactgaaaccaaactttctacgtaaaccattgcctgatcgaaccagt 24035976  T
Q  108 ctaggttgagtcctactttaattatctttactgttttgtcttttaaattatagatatatggctggttgcagtatttatttgcaaaaatcaccgtatcact 207  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24035975 ctaggttgagtcctactttaattctctttactgttttgtcttttaaattatagatatatggctggttgcagtatttatttgcaaaaatcaccgtatcact 24035876  T
Q  208 atttacataaagacatgcaaaaccagcatcaatgttttgcatttgaagattcttgtaactaatcttaaataattgagtccaagactcttgaacaccgtac 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24035875 atttacataaagacatgcaaaaccagcatcaatgttttgcatttgaagattcttgtaactaatcttaaataattgagtccaagactcttgaacgccgtac 24035776  T
Q  308 tccttcatttgccataaaaccaattcagttttcttgggattatgagataaacaaagactgtccatgaaaaccctaagaagtg 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24035775 tccttcatttgccataaaaccaattcagttttcttgggattatgagataaacaaagactgtccatcaaaaccctaagaagtg 24035694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 21 - 386
Target Start/End: Complemental strand, 15444281 - 15443910
Alignment:
Q  21 aataagtgaacatcaaagagaaacttactctcaatcaaggaactgaaaccaaactttctacgtaaaccattgcctgatcgaaccagtctaggttgagtcc 120  Q
    ||||||||||  || |||||||||||||| |||||||| ||||  ||||||||||||||||||||  | |||| |||| |||||||| || ||  | | |    
T  15444281 aataagtgaatgtctaagagaaacttactttcaatcaacgaacacaaaccaaactttctacgtaatgctttgcttgattgaaccagtgtatgta-atttc 15444183  T
Q  121 tactttaa-ttatctttactgttttgtcttttaaattatagatatatggctggttgcagtatttatttgcaaaaatcaccgtatcactatttacataaag 219  Q
    || ||||| || |||  |||||| | ||||||| |||||||||| | | | |||||||  |||||||| ||||||||||| |||||| ||||||||||||    
T  15444182 taatttaaattctctccactgttctatcttttagattatagataaaggcccggttgcaaaatttattttcaaaaatcaccatatcaccatttacataaag 15444083  T
Q  220 acatgc------aaaaccagcatcaatgttttgcatttgaagattcttgtaactaatcttaaataattgagtccaagactcttgaacaccgtactccttc 313  Q
     || ||      ||||||||  ||| | ||  ||||| ||||||||| |||||| |||||||||||||||||||||||||||| ||| || |||||||||    
T  15444082 gcaagccagttgaaaaccagggtcagttttaagcattggaagattctggtaactcatcttaaataattgagtccaagactcttcaactccatactccttc 15443983  T
Q  314 atttgccataaaaccaattcagttttcttgggattatgagataaacaaagactgtccatgaaaaccctaagaa 386  Q
    || ||||||||||| ||| ||||| | |||| || || ||| ||||||||||  ||||| | |||||||||||    
T  15443982 atatgccataaaacaaatccagttgtattggaatcataagaaaaacaaagacaatccatcagaaccctaagaa 15443910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 124 - 386
Target Start/End: Complemental strand, 23993749 - 23993481
Alignment:
Q  124 tttaattatctttactgttttgtcttttaaattatagatatatggctggttgcagtatttatttgcaaaaatcaccgtatcactatttacataaagacat 223  Q
    ||||||| ||| | ||||||| |||||||||||||||||| ||| |   ||||   ||| |||||||||||||||| |||||| |||||||||||  ||     
T  23993749 tttaattttctctgctgttttatcttttaaattatagataaatgcccaattgcgaaattcatttgcaaaaatcaccatatcaccatttacataaatgcac 23993650  T
Q  224 gcaaa------accagcatcaatgttttgcatttgaagattcttgtaactaatcttaaataattgagtccaagactcttgaacaccgtactccttcattt 317  Q
    || ||      |||| ||  ||| || ||||||  |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  23993649 gccaattgataaccatcaagaatattatgcattctaagattctggtaactaatcttaaataattgagtccaagactcttgaaccccgtactccttcatat 23993550  T
Q  318 gccataaaaccaattcagttttcttgggattatgagataaacaaagactgtccatgaaaaccctaagaa 386  Q
    |||||||||| ||||||||||  |||| ||  ||||| ||||| ||||||||  | |||||||||||||    
T  23993549 gccataaaacaaattcagtttcattggaatcgtgagaaaaacagagactgtcactcaaaaccctaagaa 23993481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 136 - 386
Target Start/End: Complemental strand, 24002401 - 24002145
Alignment:
Q  136 tactgttttgtcttttaaattatagatatatggctggttgcagtatttatttgcaaaaatcaccgtatcactatttacataaagaca------tgcaaaa 229  Q
    ||||||||| |||||||||||||||||| ||  ||||||| ||| ||  ||||||||||| |||  |||||  ||||||||||||||      | ||||     
T  24002401 tactgttttatcttttaaattatagataaatatctggttggagttttcttttgcaaaaataaccacatcaccgtttacataaagacacaccaattcaaac 24002302  T
Q  230 ccagcatcaatgttttgcatttgaagattcttgtaactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccataaaacca 329  Q
      | ||| ||||||  | || ||||||||||  ||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||| |    
T  24002301 gtatcattaatgttacggatgtgaagattctgataactaatcttaagtaattgagtccaagactcttgaactccgtactccttcatatgccataaaacaa 24002202  T
Q  330 attcagttttcttgggattatgagataaacaaagactgtccatgaaaaccctaagaa 386  Q
    |||||||| |||||| || |||| | ||||||| || |||||| |||||||||||||    
T  24002201 attcagttctcttggaatcatgataaaaacaaataccgtccatcaaaaccctaagaa 24002145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 251 - 386
Target Start/End: Complemental strand, 24010464 - 24010329
Alignment:
Q  251 tgaagattcttgtaactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccataaaaccaattcagttttcttgggattat 350  Q
    ||||||||||  ||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||||| || ||    
T  24010464 tgaagattctgataactaatcttaagtaattgagtccaagactcttgaaccccgtactccttcatatgccataaaacaaattcagttctcttggaatcat 24010365  T
Q  351 gagataaacaaagactgtccatgaaaaccctaagaa 386  Q
    || | ||||||| || |||||| |||||||||||||    
T  24010364 gataaaaacaaataccgtccatcaaaaccctaagaa 24010329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 21 - 386
Target Start/End: Complemental strand, 15509063 - 15508692
Alignment:
Q  21 aataagtgaacatcaaagagaaacttactctcaatcaaggaactgaaaccaaactttctacgtaaaccattgcctgatcgaaccagtctaggttgagtcc 120  Q
    ||||||||||  || |||||||||||||| |||||||| ||||   ||| |||||||||||||||  | |||| |||| |||||||| || |   | | |    
T  15509063 aataagtgaatgtctaagagaaacttactttcaatcaacgaacactaactaaactttctacgtaatgctttgcttgattgaaccagtgtatgga-atttc 15508965  T
Q  121 tactttaa-ttatctttactgttttgtcttttaaattatagatatatggctggttgcagtatttatttgcaaaaatcaccgtatcactatttacataaag 219  Q
    || ||||| || |||  |||||| | ||||||| |||||||||| | | | |||||||  |||||||||||||||||| | |||||| ||||||||||||    
T  15508964 taatttaaattctctccactgttctatcttttagattatagataaaggcccggttgcaaaatttatttgcaaaaatcatcatatcaccatttacataaag 15508865  T
Q  220 acatgc------aaaaccagcatcaatgttttgcatttgaagattcttgtaactaatcttaaataattgagtccaagactcttgaacaccgtactccttc 313  Q
     || ||      ||||||||  ||| | ||  ||||| ||||||||| |||||| ||||||||||||||||||| ||||| || ||| || |||||||||    
T  15508864 gcaagccagttgaaaaccagggtcagttttaagcattggaagattctggtaactcatcttaaataattgagtcctagactattcaactccatactccttc 15508765  T
Q  314 atttgccataaaaccaattcagttttcttgggattatgagataaacaaagactgtccatgaaaaccctaagaa 386  Q
    || ||||| ||||| ||| ||||||| |||| || || ||| ||||||||||  ||||| | |||||||||||    
T  15508764 atatgccaaaaaacaaatccagttttattggaatcataagaaaaacaaagacaatccatcagaaccctaagaa 15508692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 250 - 386
Target Start/End: Complemental strand, 24016870 - 24016734
Alignment:
Q  250 ttgaagattcttgtaactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccataaaaccaattcagttttcttgggatta 349  Q
    ||||||| ||| |||||| ||||||||||||| |||||||||||||||||  || ||||||||||| ||||||||||| |||||| ||||||||  || |    
T  24016870 ttgaagactctggtaactgatcttaaataatttagtccaagactcttgaaacccatactccttcatctgccataaaacaaattcacttttcttgaaatca 24016771  T
Q  350 tgagataaacaaagactgtccatgaaaaccctaagaa 386  Q
    ||||| ||||| ||||| ||||| |||||| ||||||    
T  24016770 tgagaaaaacatagactttccatcaaaaccttaagaa 24016734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 266 - 386
Target Start/End: Complemental strand, 26256841 - 26256721
Alignment:
Q  266 ctaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccataaaaccaattcagttttcttgggattatgagataaacaaagac 365  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || ||| ||| ||||| || |||||| |||||||| |    
T  26256841 ctaatcttaaataattgagtccaagactcttgaactccatactccttcatctgccataaaacaaaatcattttccttggtatcatgagaaaaacaaaggc 26256742  T
Q  366 tgtccatgaaaaccctaagaa 386  Q
      ||||| |||||| ||||||    
T  26256741 attccatcaaaaccttaagaa 26256721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 26218049 - 26217972
Alignment:
Q  250 ttgaagattcttgtaactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccataaaac 327  Q
    ||||||||| | ||||||||||||||||||||||| ||||||||||||||| || ||||||||||| |||||||||||    
T  26218049 ttgaagattatggtaactaatcttaaataattgagaccaagactcttgaactccatactccttcatctgccataaaac 26217972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 26230299 - 26230222
Alignment:
Q  250 ttgaagattcttgtaactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccataaaac 327  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||||||||| || ||||| ||||| |||||||||||    
T  26230299 ttgaacattctggtaactaatcttaaataattgagaccaagactcttgaactccatactctttcatctgccataaaac 26230222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 26237696 - 26237619
Alignment:
Q  250 ttgaagattcttgtaactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccataaaac 327  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||| ||||  || ||||| ||||| |||||||||||    
T  26237696 ttgaagattctggtaactaatcttaaataattgagaccaagactcatgaaatccatactctttcatctgccataaaac 26237619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 24010693 - 24010623
Alignment:
Q  21 aataagtgaacatcaaagagaaacttactctcaatcaaggaactgaaaccaaactttctacgtaaaccattg 92  Q
    ||||||||||||| || |||||||||||||||||||||  ||||||||||||||||||| | ||| ||||||    
T  24010693 aataagtgaacattaa-gagaaacttactctcaatcaacaaactgaaaccaaactttctgcataatccattg 24010623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 343
Target Start/End: Complemental strand, 24031314 - 24031244
Alignment:
Q  273 taaataattgagtccaagactcttgaacaccgtactccttcatttgccataaaaccaattcagttttcttg 343  Q
    |||||| ||||||||||||||||||||| ||  |||| ||||||| |||||  || |||||||||||||||    
T  24031314 taaatagttgagtccaagactcttgaactccaaactcattcattttccatatgacaaattcagttttcttg 24031244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 24011678 - 24011614
Alignment:
Q  21 aataagtgaacatcaaagagaaacttactctcaatcaaggaactgaaaccaaactttctacgtaa 85  Q
    ||||||||| |||| | ||||||||||||||||||||   ||||||||||| |||||||| ||||    
T  24011678 aataagtgagcatccatgagaaacttactctcaatcattcaactgaaaccatactttctaagtaa 24011614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 323
Target Start/End: Complemental strand, 14076762 - 14076687
Alignment:
Q  248 atttgaagattcttgtaactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccata 323  Q
    |||||||||||||  |||||||| ||||  |||||||||||||| |||| ||| ||  | ||||||||||||||||    
T  14076762 atttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccata 14076687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 323
Target Start/End: Complemental strand, 14386790 - 14386715
Alignment:
Q  248 atttgaagattcttgtaactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccata 323  Q
    |||||||||||||  |||||||| ||||  |||||||||||||| |||| ||| ||  | ||||||||||||||||    
T  14386790 atttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccata 14386715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 323
Target Start/End: Complemental strand, 22028696 - 22028637
Alignment:
Q  264 aactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccata 323  Q
    |||||||||||| |||||||||||||||||||| ||| || || ||| |||||| |||||    
T  22028696 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccata 22028637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 323
Target Start/End: Complemental strand, 22070195 - 22070120
Alignment:
Q  248 atttgaagattcttgtaactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccata 323  Q
    ||||| |||||||| |||||||| || |||||  ||||||||||||||||||| ||  | | ||||||||||||||    
T  22070195 atttggagattcttataactaattttgaataaccgagtccaagactcttgaactccaaattgcttcatttgccata 22070120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 321
Target Start/End: Original strand, 1985945 - 1986014
Alignment:
Q  252 gaagattcttgtaactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgcca 321  Q
    |||||||| | |||||||| ||||| |||||||||||||| |||| ||| ||  | ||||||||||||||    
T  1985945 gaagattcatataactaattttaaacaattgagtccaagattcttcaacgccaaattccttcatttgcca 1986014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 364
Target Start/End: Complemental strand, 22100562 - 22100461
Alignment:
Q  263 taactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccataaaaccaattcagttttcttgggattatgagataaacaaa 362  Q
    |||||||| || ||||| |||||||||||||||||||| ||  | | |||||||||||||| ||  || | |||||| |||  || |||||| |||||||    
T  22100562 taactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaacaaa 22100463  T
Q  363 ga 364  Q
    ||    
T  22100462 ga 22100461  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 22063711 - 22063651
Alignment:
Q  263 taactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccata 323  Q
    |||||||| || ||||| |||||||||||||||||||  ||  | ||||||||||||||||    
T  22063711 taactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccata 22063651  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 343
Target Start/End: Original strand, 4366481 - 4366576
Alignment:
Q  248 atttgaagattcttgtaactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccataaaaccaattcagttttcttg 343  Q
    ||||||||||||| ||||||||  ||||  ||| ||||||||||||||| ||| ||| | | |||||| ||||||||||| || ||||||||||||    
T  4366481 atttgaagattctggtaactaactttaagaaatggagtccaagactcttcaaccccgaatttcttcatctgccataaaacaaaatcagttttcttg 4366576  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 321
Target Start/End: Original strand, 50645486 - 50645544
Alignment:
Q  263 taactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgcca 321  Q
    |||||||| |||||||||||| |||||||||||||||| ||  | ||||||||||||||    
T  50645486 taactaattttaaataattgaatccaagactcttgaactccaaaatccttcatttgcca 50645544  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 323
Target Start/End: Complemental strand, 6392896 - 6392833
Alignment:
Q  260 ttgtaactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccata 323  Q
    ||||||||||| |||||||||||| |||||||||| ||||| ||  | ||||||||||||||||    
T  6392896 ttgtaactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatttgccata 6392833  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 829598 - 829659
Alignment:
Q  263 taactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccataa 324  Q
    |||||||| ||||||||||||  ||||||||||||||||||  | ||||||||||| |||||    
T  829598 taactaattttaaataattgaacccaagactcttgaacaccaaaatccttcatttggcataa 829659  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 323
Target Start/End: Complemental strand, 837842 - 837785
Alignment:
Q  266 ctaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccata 323  Q
    ||||| |||||||||||| |||||||||||||||||||  | | ||||||||||||||    
T  837842 ctaattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccata 837785  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 343
Target Start/End: Complemental strand, 23840734 - 23840664
Alignment:
Q  273 taaataattgagtccaagactcttgaacaccgtactccttcatttgccataaaaccaattcagttttcttg 343  Q
    |||||||||||||||||||||| ||||| ||  |||  ||| |||| |||| ||| |||||||||||||||    
T  23840734 taaataattgagtccaagactcctgaaccccaaactatttcctttgtcatataacaaattcagttttcttg 23840664  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 53774919 - 53774849
Alignment:
Q  253 aagattcttgtaactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccata 323  Q
    ||||||||  |||||||| ||||  ||||||||||||||||||| ||| ||  | ||||||||||||||||    
T  53774919 aagattctgataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccata 53774849  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 6372514 - 6372454
Alignment:
Q  263 taactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccata 323  Q
    |||||||| ||| |||||||| || ||||||||||||| ||  | ||||||||||||||||    
T  6372514 taactaattttatataattgaatctaagactcttgaactccagaatccttcatttgccata 6372454  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 343
Target Start/End: Original strand, 11338587 - 11338657
Alignment:
Q  273 taaataattgagtccaagactcttgaacaccgtactccttcatttgccataaaaccaattcagttttcttg 343  Q
    |||||||||||| |||||| |||||||  ||  |||| ||||||||||||| ||| |||||||||| ||||    
T  11338587 taaataattgagaccaagattcttgaaatccaaactctttcatttgccatataacaaattcagtttgcttg 11338657  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 337
Target Start/End: Original strand, 19746715 - 19746769
Alignment:
Q  283 agtccaagactcttgaacaccgtactccttcatttgccataaaaccaattcagtt 337  Q
    |||||||||||||||||| ||  ||| |||||||||||||| ||| |||||||||    
T  19746715 agtccaagactcttgaactccaaacttcttcatttgccatataacaaattcagtt 19746769  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 34861891 - 34861949
Alignment:
Q  282 gagtccaagactcttgaacaccgtactccttcatttgccataaaaccaattcagttttc 340  Q
    |||||||||||||  |||| ||  |||||||||||||||||| ||| ||||||||||||    
T  34861891 gagtccaagactcccgaactccaaactccttcatttgccatataacaaattcagttttc 34861949  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 17369748 - 17369675
Alignment:
Q  248 atttgaagattcttgtaactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgcca 321  Q
    |||||||||||||  |||||||| ||||  |||||||||||||| |||| ||| ||  | ||||||||||||||    
T  17369748 atttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgcca 17369675  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 337
Target Start/End: Complemental strand, 33576229 - 33576165
Alignment:
Q  273 taaataattgagtccaagactcttgaacaccgtactccttcatttgccataaaaccaattcagtt 337  Q
    ||||||| |||||||||||||||||||| ||  ||||||||||   ||||| ||| |||||||||    
T  33576229 taaataactgagtccaagactcttgaactccaaactccttcatcatccatataacaaattcagtt 33576165  T

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Target: scaffold0867 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 364
Target Start/End: Original strand, 4670 - 4771
Alignment:
Q  263 taactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccataaaaccaattcagttttcttgggattatgagataaacaaa 362  Q
    |||||||| || ||||| |||||||||||||||||||| ||  | | |||||||||||||| ||  || | |||||| |||  || |||||| |||||||    
T  4670 taactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaacaaa 4769  T
Q  363 ga 364  Q
    ||    
T  4770 ga 4771  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 23086833 - 23086780
Alignment:
Q  281 tgagtccaagactcttgaacaccgtactccttcatttgccataaaaccaattca 334  Q
    |||||||||||||||||||| ||  |||||||||| ||||||| ||| ||||||    
T  23086833 tgagtccaagactcttgaactccaaactccttcatctgccatataacaaattca 23086780  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 25377143 - 25377106
Alignment:
Q  263 taactaatcttaaataattgagtccaagactcttgaac 300  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  25377143 taactaattttaaataattgaatccaagactcttgaac 25377106  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 554545 - 554485
Alignment:
Q  263 taactaatcttaaataattgagtccaagactcttgaacaccgtactccttcatttgccata 323  Q
    |||||||| |||| |||||||||||||||||||| ||| || || ||  ||||||||||||    
T  554545 taactaattttaagtaattgagtccaagactctttaactccatattctatcatttgccata 554485  T

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