View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4134_high_17 (Length: 356)
Name: NF4134_high_17
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 14231063 - 14230740
Alignment:
| Q |
1 |
caaacgaaaacccatattaattatgatgaaatattctggattgatttgaattcaagagaagagacggaaataatgcaaatttatataagaagatgcgtgc |
100 |
Q |
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| T |
14231063 |
caaacgaatacccatattaattatgatgaaatattctggattgatttgaattcaagagaagagacggaaataatgcaaatttatataagaagatgtgtgc |
14230964 |
T |
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| Q |
101 |
agtggatgatggatgcgtgaaaaaattattttggagcagaatttggcgagtgatgactaaagtttgacaagtcactcaaacttagtccca------cggt |
194 |
Q |
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| T |
14230963 |
agtg---gatggatgtgtgaaaaaattattttggagcataatttggcgagtgatgactaaagtttgacaagtcactcaaacttagtcccacattgccggt |
14230867 |
T |
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| Q |
195 |
atgaggtataatatgaggttgaatcgtatataataacaagcgtagctgttgtttaagataaagtagcagctgcctaaattggttggggtttggatcatcc |
294 |
Q |
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| T |
14230866 |
atgaggtataatatgaggttgaatcgtatataataacaggcgtagctgttgtttacgataaagtagcagctgcctaaattggttggggtttggatcatcc |
14230767 |
T |
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| Q |
295 |
aagctccattgcaatagttataaggaa |
321 |
Q |
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| T |
14230766 |
aagctccattgcaatagttataaggaa |
14230740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 35 - 191
Target Start/End: Complemental strand, 14226717 - 14226568
Alignment:
| Q |
35 |
tctggattgatttgaattcaagagaagagacggaaataatgcaaatttatataagaagatgcgtgcagtggatgatggatgcgtgaaaaaattattttgg |
134 |
Q |
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| T |
14226717 |
tctgaattgatttgaattcaagagaagacacagaaagaatgcaaatatatataagaagatgtgtgcagtggatg-tgtat------aacaatgatttttg |
14226625 |
T |
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| Q |
135 |
agcagaatttggcgagtgatgactaaagtttgacaagtcactcaaacttagtcccac |
191 |
Q |
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| T |
14226624 |
agctgaatttggcgagtggtgactaaagtttcaaaagtcactcataattagtcccac |
14226568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 14229464 - 14229383
Alignment:
| Q |
110 |
tggatgcgtgaaaaaattattttggagcagaatttggcgagtgatgactaaagtttgacaagtcactcaaacttagtcccac |
191 |
Q |
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| T |
14229464 |
tggatgtgtgtaacaatgattttggaactcaatttggcgagtggtgactaaactttcacaagtcactcatatttagtcccac |
14229383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 14223906 - 14223854
Alignment:
| Q |
139 |
gaatttggcgagtgatgactaaagtttgacaagtcactcaaacttagtcccac |
191 |
Q |
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| T |
14223906 |
gaatttggcgagtggtgactaaagtttcacaattcacttatatttagtcccac |
14223854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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