View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4134_high_18 (Length: 351)
Name: NF4134_high_18
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 24202725 - 24202961
Alignment:
| Q |
17 |
atctttgtatagttagttttccatagtgttgaggttggaagtgcaagtctaataagttgtcttaatttttgttgttaactttt-acgaaatgattcactc |
115 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| |||||||||||||||| |||| |||| | |||||||||||||| |
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| T |
24202725 |
atctttgtatagttagttttacatagtgtagaggttggaagtgcaaatctaataagctgtcttaatttttgttattaattttttatgaaatgattcactc |
24202824 |
T |
|
| Q |
116 |
aaatgttagcggtttggaaaaaagacaggaaaattgttttgacttagttgattcca------atatgcttactgaaactgacagtt-ctgtgtgcatgtt |
208 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
24202825 |
aaatgttagcggtatggaaaaaaggtaggaaaattgttttgacttagttgattccaataaatatatgcttactgaaactgacagttaatgtgtgcatgtt |
24202924 |
T |
|
| Q |
209 |
aattcataggaaatgaatgcacaaattccaatttggt |
245 |
Q |
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|||| |||||||||||||||| ||||||||||||||| |
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| T |
24202925 |
aatttataggaaatgaatgcaaaaattccaatttggt |
24202961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 242 - 351
Target Start/End: Original strand, 24203020 - 24203129
Alignment:
| Q |
242 |
tggtacttttagaatttaggttcggcgtaaatcaacccttacgaacccgcaatagcttcttcgggttgataatattttcttacatggactctcatgtgtt |
341 |
Q |
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||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24203020 |
tggtacttttagaatttgggtacggcataaatcaacccttacgaacccgcaatagcttcttcgggttgataatattttcttacatggactctcatgtgtt |
24203119 |
T |
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| Q |
342 |
cgtattgtcc |
351 |
Q |
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|||||||||| |
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| T |
24203120 |
cgtattgtcc |
24203129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 29410872 - 29410715
Alignment:
| Q |
17 |
atctttgtatagttagttttccatagtgttgaggttggaagtgcaagtctaataagttgtcttaatttttgttgttaacttttacgaaatgattcactca |
116 |
Q |
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|||||||| |||||| |||| | |||| | || |||||||| |||| ||| || | ||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
29410872 |
atctttgtttagttacttttacttagtatagaagttggaagcgcaattcttatcaactgtcttaatttttgttgttaatttttaagaaatgattcactca |
29410773 |
T |
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| Q |
117 |
aatgttagcggtttggaaaaaagacaggaaaattgttttgacttagttgattccaata |
174 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
29410772 |
aatgttagcggtttggaaaaaaggcaggaaaattgttttgacttagttgagtccaata |
29410715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 29410643 - 29410578
Alignment:
| Q |
182 |
tgaaactgaca--gttctgtgtgcatgttaattcataggaaatgaatgcacaaattccaatttggt |
245 |
Q |
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||||||||||| |||||||||||||||||||| ||||||| ||||||| ||||||||||||||| |
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| T |
29410643 |
tgaaactgacatagttctgtgtgcatgttaatttataggaagtgaatgcgaaaattccaatttggt |
29410578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 27561464 - 27561350
Alignment:
| Q |
23 |
gtatagttagttttccatagtgttgaggttggaagtgcaagtctaataagttgtcttaatttttgttgttaacttttacgaaatgattcactcaaatgtt |
122 |
Q |
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||||||||| |||| |||||| | ||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| |||| |||||||||||||||| |
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| T |
27561464 |
gtatagttacttttacatagtatagaggttggaagcgcaagtcttataagctgtcttaatttttgttgttagtttttatgaaacgattcactcaaatgtt |
27561365 |
T |
|
| Q |
123 |
agcggtttggaaaaa |
137 |
Q |
| |
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|| |||||||||||| |
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| T |
27561364 |
agtggtttggaaaaa |
27561350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 36668337 - 36668224
Alignment:
| Q |
21 |
ttgtatagttagttttccatagtgttgaggttggaagtgcaagtctaataagttgtcttaatttttgttgttaacttttacgaaatgattcactcaaatg |
120 |
Q |
| |
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||||||||||| |||| |||||| | ||||||||||| |||||||| ||||| |||||||| || ||||||| ||||| |||||| |||||||||||| |
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| T |
36668337 |
ttgtatagttactttttcatagtatagaggttggaagcgcaagtcttataagctgtcttaa---ttattgttaatttttaagaaatggttcactcaaatg |
36668241 |
T |
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| Q |
121 |
ttagcggtttggaaaaa |
137 |
Q |
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||| |||||||||||| |
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| T |
36668240 |
atagtggtttggaaaaa |
36668224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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