View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4134_high_22 (Length: 326)
Name: NF4134_high_22
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5461361 - 5461581
Alignment:
| Q |
1 |
tttctccaacctaaaataatggaacagttgtaaggtaaaatagaaagtaataaatgtacaattaatgatgttatgtgaataatcagtaatggctgacatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5461361 |
tttctccaacctaaaataatggaacagttgtaaggtaaaatagaaagtaataaatgtacaattaatgatgttatgtgaataatcagtaatggctgacatt |
5461460 |
T |
|
| Q |
101 |
gctaaccaagtgtaacatgtctaattctactaggtccagcttcatgagttccttgaactctcggctgtctgttttcggtgtgcgcggtggttgaacttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5461461 |
gctaaccaagtgtaacatgtctaattctactaggtccagcttcatgagttccttgaactctcggctgtctgttttcggtgtgcgcggtggttgaacttgt |
5461560 |
T |
|
| Q |
201 |
ttattttccttttgaccttta |
221 |
Q |
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||||| ||||||||||||||| |
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| T |
5461561 |
ttattatccttttgaccttta |
5461581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 219 - 318
Target Start/End: Original strand, 5461604 - 5461703
Alignment:
| Q |
219 |
ttatggatagttgatgttctctttgcacaacgctcattctttgtttacttttcctttcatttcatttgctgccttgatgttggcttaatggttctctgct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
5461604 |
ttatggatagttgatgttctctttgcacaacgctcattctttgtttacttttcctttcaattcatttgctgccttgatgttggcttaatggttgtctgct |
5461703 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 17882689 - 17882641
Alignment:
| Q |
12 |
taaaataatggaacagttgtaaggtaaaatagaaagtaataaatgtaca |
60 |
Q |
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| T |
17882689 |
taaaataatgtaacagttgtaaggtaaaataaaaagaagtaaatgtaca |
17882641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 24866816 - 24866874
Alignment:
| Q |
3 |
tctccaacctaaaataatggaacagttgtaaggtaaaatagaaagtaataaatgtacaa |
61 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
24866816 |
tctccaacctaaaataatgtaacagttgtaaggtaaaatagaaagtagtaaatgtacaa |
24866874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 2248768 - 2248828
Alignment:
| Q |
1 |
tttctccaacctaaaataatggaacagttgtaaggtaaaatagaaagtaataaatgtacaa |
61 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||| |
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| T |
2248768 |
tttctccaacctaaaataatgtaacagttgtaaggtaaaatcgaaagtagtaaatgtacaa |
2248828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 14138535 - 14138482
Alignment:
| Q |
1 |
tttctccaacctaaaataatggaacagttgtaaggtaaaatagaaagtaataaat |
55 |
Q |
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|||||||||||||||||| || |||||||||||||||| |||||||||| ||||| |
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|
| T |
14138535 |
tttctccaacctaaaata-tgtaacagttgtaaggtaacatagaaagtagtaaat |
14138482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 40801292 - 40801232
Alignment:
| Q |
1 |
tttctccaacctaaaataatggaacagttgtaaggtaaaatagaaagtaataaatgtacaa |
61 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| ||||||| ||||| | || |||||||| |
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| T |
40801292 |
tttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaaggagtagatgtacaa |
40801232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 18701685 - 18701745
Alignment:
| Q |
1 |
tttctccaacctaaaataatggaacagttgtaaggtaaaatagaaagtaataaatgtacaa |
61 |
Q |
| |
|
|||||||||| |||| ||||| ||||||||||| ||||||| ||||| | || |||||||| |
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|
| T |
18701685 |
tttctccaacgtaaattaatgtaacagttgtaatgtaaaattgaaaggagtagatgtacaa |
18701745 |
T |
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