View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4134_high_25 (Length: 293)
Name: NF4134_high_25
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 14231790 - 14231560
Alignment:
| Q |
10 |
attattcttcacgccattgatagggatgatccatttgtaatttcttaagaactcctgttttgtttcttaataatgttatatggcaatggtaacatataac |
109 |
Q |
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| T |
14231790 |
attattcttcacgccattgataggaatgatccatttgtaatttcttaagaactcctgttttctttcttaataatgttatatggcaatggtaacatataac |
14231691 |
T |
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| Q |
110 |
tttgagacctaccataaaattttaaaccatataaaataattcacattattgatgacatccgaaaattttggcatcgttaaacttctaggatttcaaattt |
209 |
Q |
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| T |
14231690 |
attgagacctaccataaaattttaaaccatataaaataattcacattattgatgacatccgaaaattttggcattgttaaacttacaggatttcaaattt |
14231591 |
T |
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| Q |
210 |
cccacgtgtatgttatattggcaaatttgat |
240 |
Q |
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| T |
14231590 |
cccacgtgtatgttatatttgcaaatttgat |
14231560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 14231576 - 14231540
Alignment:
| Q |
239 |
atatttgcaaatttgatgcaacaagcaaagtttcaca |
275 |
Q |
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| T |
14231576 |
atatttgcaaatttgatgcaacaagcaaagtttcaca |
14231540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 14869421 - 14869495
Alignment:
| Q |
149 |
ttcacattattgatgacatccgaaaattttggcatcgttaaacttctaggatttcaaatttcccacgtgtatgtt |
223 |
Q |
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| T |
14869421 |
ttcacaatattgatgacatcccaaaattttggaattattaaacttgtaagattccaactttcccatgtgtttgtt |
14869495 |
T |
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