View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4134_high_30 (Length: 240)
Name: NF4134_high_30
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 48076762 - 48076543
Alignment:
| Q |
1 |
cacaacctaacggtcctgtaccagtcaccaaaactcttcttgctcccaattcataaagcctctgcaatgcatttgagtaagtgcatcatttaatattact |
100 |
Q |
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| T |
48076762 |
cacagcctaacggtcctgtaccagtcaccaaaactcttcttgctcccaattcataaagcctctgcaatgcatttgagtaagtgcatcatttaatattact |
48076663 |
T |
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| Q |
101 |
tgcacaattattgacgtacgttaaaaaagacaaatgtgtaagagatagaccccataacacattaattttccccacatgcatatgcttctcatatcataga |
200 |
Q |
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| T |
48076662 |
tgcacaattattgacgtacgttaaaaaagacaaatgtgtaagagatagaccccataacacattaattttccccacatgcatatgcttctcat---ataaa |
48076566 |
T |
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| Q |
201 |
tgatgccattggggatcagaaac |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
48076565 |
tgatgccattggggatcagaaac |
48076543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 6340910 - 6340964
Alignment:
| Q |
1 |
cacaacctaacggtcctgtaccagtcaccaaaactcttcttgctcccaattcata |
55 |
Q |
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|||||||||| ||||| || || |||||||||||||||||||||||||||||||| |
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| T |
6340910 |
cacaacctaatggtcccgttcctgtcaccaaaactcttcttgctcccaattcata |
6340964 |
T |
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