View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4134_high_37 (Length: 205)
Name: NF4134_high_37
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_high_37 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 139; Significance: 6e-73; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 27348733 - 27348559
Alignment:
| Q |
18 |
acaacagtgttattgaatttgtgacattatctagagttttaactgttaaaaagatcccttcgatcgatgtgattggtgtgccaaatttgttgaatggtga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| | |
|
|
| T |
27348733 |
acaacagtgttattgaatttgtgacattatctggagttttaactgttaaaaagatcccttcgatcgatgtggttggtgtgccaaatttgctgaatggtaa |
27348634 |
T |
|
| Q |
118 |
agctccaccggttggattttacattgagttggattttcctgcttactatcctgttacaaaattatgccatgatga |
192 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||| |
|
|
| T |
27348633 |
agctcctccggttggattttacattgagttggattttcctgcttattatcctattacaaaattataccacgatga |
27348559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 27322105 - 27321931
Alignment:
| Q |
18 |
acaacagtgttattgaatttgtgacattatctagagttttaactgttaaaaagatcccttcgatcgatgtgattggtgtgccaaatttgttgaatggtga |
117 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| | |
|
|
| T |
27322105 |
acaacagtgttattgaatttgtgacactatctggagttttaactgttaaaaagatcccttcgatcgatgtggttggtgtgccaaatttgctgaatggtaa |
27322006 |
T |
|
| Q |
118 |
agctccaccggttggattttacattgagttggattttcctgcttactatcctgttacaaaattatgccatgatga |
192 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||| |
|
|
| T |
27322005 |
agctcctccggttgaattttacattgagttggattttcctgcttattatcctattacaaaattataccacgatga |
27321931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 27265433 - 27265259
Alignment:
| Q |
18 |
acaacagtgttattgaatttgtgacattatctagagttttaactgttaaaaagatcccttcgatcgatgtgattggtgtgccaaatttgttgaatggtga |
117 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| |||||||| | |
|
|
| T |
27265433 |
acaacggtgttattaaatttgtgacattatctggagttttaactgttaaaaagatcccatcgatcgatgtggttggtgtaccaaatttgctgaatggtaa |
27265334 |
T |
|
| Q |
118 |
agctccaccggttggattttacattgagttggattttcctgcttactatcctgttacaaaattatgccatgatga |
192 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||| |
|
|
| T |
27265333 |
agctcctccggttggattttacattgagttggattttcctgcttattatcctattacaaaattataccacgatga |
27265259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 25 - 163
Target Start/End: Complemental strand, 32164979 - 32164844
Alignment:
| Q |
25 |
tgttattgaatttgtgacattatctagagttttaactgttaaaaagatcccttcgatcgatgtgattggtgtgccaaatttgttgaatggtgaagctcca |
124 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||| |||| ||||||||| ||||| ||||||| ||||||||| |||||| ||||| |||||||| || |
|
|
| T |
32164979 |
tgttattgaatttgtgacactgtctggagttttaacagttagaaagatcccatcgatggatgtgactggtgtgccgaatttgctgaatagtgaagctgca |
32164880 |
T |
|
| Q |
125 |
ccggttggattttacattgagttggattttcctgcttac |
163 |
Q |
| |
|
| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
32164879 |
---gctggattttatattgaaatggattttcctgcttac |
32164844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University