View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4134_high_5 (Length: 575)
Name: NF4134_high_5
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 227 - 558
Target Start/End: Complemental strand, 5470728 - 5470402
Alignment:
| Q |
227 |
aatactttggatgttttcatttgactaaaaagttaatttaaaatatatcacatcatattttaattacattgcgatgctannnnnnngttgtttattgcct |
326 |
Q |
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| T |
5470728 |
aatactttggatgctttcatttgaataaaaagttaatttaaaagatatcgcatcatattttaattacatt----tgctttttttttttt-tttattgtct |
5470634 |
T |
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| Q |
327 |
ttatttgttaaagtgcgggcaattgtcacaaatgtaaacacttaggtgtccaaaggctaccagaatgaacacaaaacttgttatgtaagatggtatgagc |
426 |
Q |
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| T |
5470633 |
ttatttattaaagtgcgggcaattgtcacaaatgtaaacacttaggtgtccaaagggtacgaggatgaacacaaaacttgttatgtaagatggtatgagc |
5470534 |
T |
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| Q |
427 |
atgaatacaaacattttttaaaaatgcgctatggggatcgacattatagtgtcccaggagtttatatcgagtttgaataccaataatctctcctcaagtg |
526 |
Q |
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| T |
5470533 |
atgaatacaaacattttttaaaaatgcgctatggggatcgacattatagtgtcccgggagtttatatcgagtttgaataccaataatctctcctcaagtg |
5470434 |
T |
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| Q |
527 |
tgaataaaccctctcattatacttgatctata |
558 |
Q |
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| T |
5470433 |
tgaataaaccatgtcattatacttgatctata |
5470402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 5470977 - 5470787
Alignment:
| Q |
13 |
aatattcacaatgaaccggatgaatacccatatttatgagtctgaatatgagcttaagtaactaacaacaaatttaaatgagtatgaatgcgaatagaga |
112 |
Q |
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| T |
5470977 |
aatattcacaatgaaccggatgaatacccgtatttatgagtctgaatatgagcttaagtaactaacaacaaatttaaatgagtatgaatgcgaacagaga |
5470878 |
T |
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| Q |
113 |
caactcg-cccgcaatccacacatgtataaataaacaatttaattttatataactaaaattaatccattaatcataaacctttaatttatt |
202 |
Q |
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| T |
5470877 |
caactcgccccgcaatccacacatgtataaataaacaatttaattttatataactaaaattaatccattaatcataaacctttaatttatt |
5470787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 215
Target Start/End: Complemental strand, 5470772 - 5470742
Alignment:
| Q |
185 |
ataaacctttaatttattgtaatgtgcatat |
215 |
Q |
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| T |
5470772 |
ataaacctttaatttattgtaatgtgcatat |
5470742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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