View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4134_high_6 (Length: 573)

Name: NF4134_high_6
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4134_high_6
NF4134_high_6
[»] chr8 (2 HSPs)
chr8 (11-454)||(39854372-39854814)
chr8 (444-557)||(39854828-39854940)
[»] chr4 (2 HSPs)
chr4 (24-426)||(21955225-21955622)
chr4 (179-341)||(11188340-11188502)
[»] chr3 (2 HSPs)
chr3 (52-331)||(52056034-52056312)
chr3 (52-331)||(53575644-53575922)
[»] scaffold0002 (1 HSPs)
scaffold0002 (52-331)||(466625-466903)
[»] chr5 (1 HSPs)
chr5 (52-331)||(35896017-35896295)
[»] chr2 (1 HSPs)
chr2 (52-331)||(30200789-30201067)
[»] chr1 (2 HSPs)
chr1 (52-331)||(31353555-31353833)
chr1 (52-331)||(16990842-16991120)
[»] chr7 (1 HSPs)
chr7 (150-331)||(27142913-27143094)


Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 11 - 454
Target Start/End: Original strand, 39854372 - 39854814
Alignment:
Q  11 catcatcatatgctaaatcaatttcattgcagtgtaattctgaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggtt 110  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39854372 catcatcatatactaaatcaatttcattgcagtgtaattctgaaacttttcgttgagatgacaacatatgaattgtttcttgcagatgtaaatcatggtt 39854471  T
Q  111 atgctcttccacaaattcatgaaccaccannnnnnncaaccacatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgac 210  Q
    |||||||||||||||||||||||||||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39854472 atgctcttccacaaattcatgaaccaccatttttt-caaccacatttttaagtcctaatcttgctcgacaattcgttctagtctctagtcttggattgac 39854570  T
Q  211 tgttttatgatcatgtttgtctggctttcgtaaaccttctttaaagcaaacaaatctagaagaattagttgaaccatcttttttcttgcgtgtataatcc 310  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||    
T  39854571 tgttttacgatcatgtttgtctggctttcgtaaaccttctttaaagcaaacaaatctacatgaattagttgaaccatcttttttcttgtgtgtataatcc 39854670  T
Q  311 ttcctaactccaaatcaaacccttccaccatccatacttaacccaaaagttccaagcagtctcaatgttatcaaaaaccatatttatctatggcttccaa 410  Q
    |||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39854671 ttcctccctccaaatcaaacccttccaccatccatactttacccaaaagttccaagcagtctcaatgttatcaaaaaccatatttatctatggcttccaa 39854770  T
Q  411 ttttcttgcatcttgtggtaaaacttctctctctatatatatat 454  Q
    ||||||||||||||||||||||| |||| | | |||||||||||    
T  39854771 ttttcttgcatcttgtggtaaaagttctatatatatatatatat 39854814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 444 - 557
Target Start/End: Original strand, 39854828 - 39854940
Alignment:
Q  444 tatatatatatgcaagaaaatcatgaaatgatgacgaaacaaataaaaaagagattgagtagagtgttttacccagaagaaacgagttgatacatgaagg 543  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39854828 tatatatatataaaagaaaatcatgaaatgatgacgaaacaaataaaaaagagattgagtagagtgtttta-ccagaagaaacgagttgatacatgaagg 39854926  T
Q  544 tttagagaatgaaa 557  Q
    ||||||||||||||    
T  39854927 tttagagaatgaaa 39854940  T

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Target: chr4 (Bit Score: 105; Significance: 4e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 24 - 426
Target Start/End: Complemental strand, 21955622 - 21955225
Alignment:
Q  24 taaatcaatttcattgcagtgtaattctgaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccaca 123  Q
    |||||||||||||||||| || |||| ||| |||||||||||||||||||||||||||| | ||| |   |||||||||||||||||||| || ||  ||    
T  21955622 taaatcaatttcattgcaatgaaattttgatactttttgttgagatgacaacatatgaagtgtttgtgatagatgtaaatcatggttatgttcctctgca 21955523  T
Q  124 aattcatgaaccaccannnnnnncaaccacatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatca 223  Q
    |||||||| |||||||        |||||||||||||| ||||  | |||||  |||||| |||  ||||||| || ||||||||| ||||||||  ||     
T  21955522 aattcatgcaccaccaatgttgg-aaccacatttttaagtcctggtgttgctttacaatttgttacagtctctggttttggattgattgttttatattct 21955424  T
Q  224 tgtttgtctggctttcgtaaaccttctttaaagcaaacaaatctagaagaattagttgaaccatcttttttcttgcgtgtataatccttcctaactccaa 323  Q
     ||||||||| ||| |  |||||||||||| | ||||||||||| |||||| ||| ||||||||||||||||||  |||||||||  |||||   |||||    
T  21955423 cgtttgtctgacttccaaaaaccttctttacatcaaacaaatctggaagaactagctgaaccatcttttttcttatgtgtataatgtttcctcgatccaa 21955324  T
Q  324 atcaaacccttccaccatccatacttaacccaaaagttccaagcagtctcaatgttatcaaaaaccatatttatctatggcttccaattttcttgcatct 423  Q
    ||| |||| |||||    ||||| |   |||||||||||||||||  ||||||| | ||||||||||||  |||||  | |||||| |||||||||||||    
T  21955323 atccaacctttcca----ccataatatgcccaaaagttccaagcaacctcaatgctgtcaaaaaccatacatatcttcgtcttccatttttcttgcatct 21955228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 341
Target Start/End: Complemental strand, 11188502 - 11188340
Alignment:
Q  179 caattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcgtaaaccttctttaaagcaaacaaatctagaagaattag 278  Q
    ||||| ||||| |||||| | ||||||||||  ||||||  |||  |||||||||||||||| |||||||| ||| | |||||||||||  ||||| | |    
T  11188502 caatttgttctggtctctggccttggattgatagttttaaaatctcgtttgtctggctttcgcaaaccttcgttacaacaaacaaatctgcaagaagtcg 11188403  T
Q  279 ttgaaccatcttttttcttgcgtgtataatccttcctaactccaaatcaaacccttccaccat 341  Q
    || ||||||||||| ||||  ||| ||| |  ||||| |||||||||| ||| ||||||||||    
T  11188402 ttaaaccatcttttgtcttatgtgaatattgtttcctcactccaaatccaactcttccaccat 11188340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 52 - 331
Target Start/End: Original strand, 52056034 - 52056312
Alignment:
Q  52 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 151  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  52056034 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 52056132  T
Q  152 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcgtaaaccttctt 251  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | |||||||||||||| |  |||||||    
T  52056133 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcgcatgccttctt 52056232  T
Q  252 taaagcaaacaaatctagaagaattagttgaaccatcttttttcttgcgtgtataatccttcctaactccaaatcaaacc 331  Q
    |  |||||||||| ||| |||||  |  ||||||||| |||||| || |||||||||| ||||| ||||| |||| ||||    
T  52056233 tgcagcaaacaaacctacaagaagaaactgaaccatcctttttcctgtgtgtataatctttcctcactccgaatccaacc 52056312  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 52 - 331
Target Start/End: Original strand, 53575644 - 53575922
Alignment:
Q  52 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 151  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  53575644 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 53575742  T
Q  152 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcgtaaaccttctt 251  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | |||||||||||||| |  |||||||    
T  53575743 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcgcatgccttctt 53575842  T
Q  252 taaagcaaacaaatctagaagaattagttgaaccatcttttttcttgcgtgtataatccttcctaactccaaatcaaacc 331  Q
    |  |||||||||| ||| |||||  |  ||||||||| |||||  || |||||||||| ||||| ||||| |||| ||||    
T  53575843 tgcagcaaacaaacctacaagaagaaactgaaccatccttttttctgtgtgtataatctttcctcactccgaatccaacc 53575922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 52 - 331
Target Start/End: Original strand, 466625 - 466903
Alignment:
Q  52 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 151  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  466625 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 466723  T
Q  152 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcgtaaaccttctt 251  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | |||||||||||||| |  |||||||    
T  466724 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcgcatgccttctt 466823  T
Q  252 taaagcaaacaaatctagaagaattagttgaaccatcttttttcttgcgtgtataatccttcctaactccaaatcaaacc 331  Q
    |  |||||||||| ||| |||||  |  ||||||||| |||||  || |||||||||| ||||| ||||| |||| ||||    
T  466824 tgcagcaaacaaacctacaagaagaaactgaaccatccttttttctgtgtgtataatctttcctcactccgaatccaacc 466903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 52 - 331
Target Start/End: Complemental strand, 35896295 - 35896017
Alignment:
Q  52 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 151  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  35896295 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 35896197  T
Q  152 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcgtaaaccttctt 251  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | |||||||||||||| |  |||||||    
T  35896196 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcgcatgccttctt 35896097  T
Q  252 taaagcaaacaaatctagaagaattagttgaaccatcttttttcttgcgtgtataatccttcctaactccaaatcaaacc 331  Q
    |  |||||||||| ||| |||||  |  ||||||||| |||||  || |||||||||| ||||| ||||| |||| ||||    
T  35896096 tgcagcaaacaaacctacaagaagaaactgaaccatccttttttctgtgtgtataatctttcctcactccgaatccaacc 35896017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 52 - 331
Target Start/End: Original strand, 30200789 - 30201067
Alignment:
Q  52 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 151  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  30200789 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 30200887  T
Q  152 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcgtaaaccttctt 251  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | |||||||||||||| |  |||||||    
T  30200888 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcgcatgccttctt 30200987  T
Q  252 taaagcaaacaaatctagaagaattagttgaaccatcttttttcttgcgtgtataatccttcctaactccaaatcaaacc 331  Q
    |  |||||||||| ||| |||||  |  ||||||||| |||||  || |||||||||| ||||| ||||| |||| ||||    
T  30200988 tgcagcaaacaaacctacaagaagaaactgaaccatccttttttctgtgtgtataatctttcctcactccgaatccaacc 30201067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 52 - 331
Target Start/End: Complemental strand, 31353833 - 31353555
Alignment:
Q  52 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 151  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  31353833 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 31353735  T
Q  152 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcgtaaaccttctt 251  Q
    ||||| |||| |||||| ||||||  |||||| ||||| |||||||||||||||||   |||||||| |||  | |||||||||||||| |  |||||||    
T  31353734 acattcttaagtcctaaccttgcttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcgcatgccttctt 31353635  T
Q  252 taaagcaaacaaatctagaagaattagttgaaccatcttttttcttgcgtgtataatccttcctaactccaaatcaaacc 331  Q
    |  |||||||||| ||| |||||  |  ||||||||| |||||  || |||||||||| ||||| ||||| |||| ||||    
T  31353634 tgcagcaaacaaacctacaagaagaaactgaaccatccttttttctgtgtgtataatctttcctcactccgaatccaacc 31353555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 52 - 331
Target Start/End: Complemental strand, 16991120 - 16990842
Alignment:
Q  52 gaaactttttgttgagatgacaacatatgaattatttcttgcagatgtaaatcatggttatgctcttccacaaattcatgaaccaccannnnnnncaacc 151  Q
    ||||| ||| ||||||| |||||||||||| || ||||| ||| | |||| || ||||| || || |||||||| ||||| |||| ||       || ||    
T  16991120 gaaacctttcgttgagacgacaacatatgagttgtttctggcaaaagtaactcgtggttgtggtcctccacaaaatcatgcaccatcaattttc-catcc 16991022  T
Q  152 acatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcgtaaaccttctt 251  Q
    ||||| |||| |||||| |||| |  |||||| ||||| |||||||||||||||||   |||||||| |||  | |||||||||||||| |  |||||||    
T  16991021 acattcttaagtcctaaccttgtttcacaatttgttctggtctctagtcttggattctttgttttataatctcgcttgtctggctttcgcatgccttctt 16990922  T
Q  252 taaagcaaacaaatctagaagaattagttgaaccatcttttttcttgcgtgtataatccttcctaactccaaatcaaacc 331  Q
    |  |||||||||| ||| |||||  |  ||||||||| |||||  || |||||||||| ||||| ||||| |||| ||||    
T  16990921 tgcagcaaacaaacctacaagaagaaactgaaccatcctttttgctgtgtgtataatctttcctcactccgaatccaacc 16990842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 150 - 331
Target Start/End: Complemental strand, 27143094 - 27142913
Alignment:
Q  150 ccacatttttaattcctaatcttgctcgacaattcgttctagtctctagtcttggattgactgttttatgatcatgtttgtctggctttcgtaaaccttc 249  Q
    ||||||| |||| || ||||||||||  |||||| ||||| || |||||||||| |||   ||||||||||||  | |||| |||||||||||  |||||    
T  27143094 ccacattcttaagtcataatcttgcttcacaatttgttctggtttctagtcttgaattctttgttttatgatctcgcttgtttggctttcgtatgccttc 27142995  T
Q  250 tttaaagcaaacaaatctagaagaattagttgaaccatcttttttcttgcgtgtataatccttcctaactccaaatcaaacc 331  Q
    |||  ||||||| || ||| |||||  | |||||||||| ||  || || |||||||||| ||||| |||||||||| ||||    
T  27142994 tttgcagcaaacgaacctacaagaagaaattgaaccatccttgctcctgtgtgtataatctttcctcactccaaatccaacc 27142913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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