View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4134_high_8 (Length: 503)
Name: NF4134_high_8
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 17 - 358
Target Start/End: Complemental strand, 52531258 - 52530914
Alignment:
| Q |
17 |
attattacccattagctgggaggttgagaagttgttcctctaatttggatgatgagaagaagcttgaagtggattgcaatggagaaggtgctttgtttgt |
116 |
Q |
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| T |
52531258 |
attattacccattagctgggaggttgagaagttgttcctctaatttggatgatgagaagaagcttgaagtggattgcaatggagaaggtgctttgtttgt |
52531159 |
T |
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| Q |
117 |
tgaggctttcatgtctatcactgctcaagaattacttgaaccttctaagttgccatacaagtcatggagaaagttcacttataaggtggaatctcaaagt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52531158 |
tgaggctttcatgtctatcactgctcaagaattacttgaaccttctaagttgccaaacaagtcatggagaaagttcacttataaggtggaatctcaaagt |
52531059 |
T |
|
| Q |
217 |
ttcttagatgttcctcctcttatagttcaggtcagattcttcattcttatgctaattgttcatttttcaaactcttatttctattcaatgaacttatgaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52531058 |
ttcttagatgttcctcctcttatagttcaggtcagattcttcattcttatgctaattgttcatttttcaaactcttatttctattcaatgaacttatgaa |
52530959 |
T |
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| Q |
317 |
acttcttcccctga---tcatatgtaatgtcattcatttatttcc |
358 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| |
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| T |
52530958 |
acttcttcccctgatcatcatatgtaatgtcattcatttatttcc |
52530914 |
T |
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