View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4134_low_13 (Length: 400)
Name: NF4134_low_13
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 39 - 257
Target Start/End: Complemental strand, 31176041 - 31175827
Alignment:
| Q |
39 |
attcattttctctctttccaataattttgatgtctaatcttttcttccataacaaacaattgtgatacacta--tcccctctccaataaattccttcann |
136 |
Q |
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| T |
31176041 |
attcattttctctctttccaataattttgatgtctaatcttttcttccata----acaattgtgatatattatctcctctctccaataaattccttcatt |
31175946 |
T |
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| Q |
137 |
nnnnngcacacactttatctctccaataaaattgataggtcctttgactnnnnnnnnnnnntaaataaattgattggtcctcttttcttctttttgaaca |
236 |
Q |
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| T |
31175945 |
ttttt-cacacactttatctctccaataaatttgataggtcctttgactaaaaacaaaaaataaataaattgattggtcctc-tttcttttttttgaaca |
31175848 |
T |
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| Q |
237 |
ttaacgaagtattttattttt |
257 |
Q |
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||||| ||||||||| ||||| |
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| T |
31175847 |
ttaacaaagtattttgttttt |
31175827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 31194230 - 31194169
Alignment:
| Q |
278 |
aatagaattttaactatacaaggaaccattattatgggtgtgtttgatttgctaaacagtaa |
339 |
Q |
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| T |
31194230 |
aatagaattttaactacacaagaaaccattattatgggtgtgtttgatatgttaaacagtaa |
31194169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 31194547 - 31194467
Alignment:
| Q |
51 |
tctttccaataattttgatgtctaatcttttcttccataacaaacaattgtgatacactatccc--ctctccaataaattc |
129 |
Q |
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| T |
31194547 |
tctttcaaataactttgatgtctaatcttttcttcaataataaataattgtgatacattaccccctctctccaataaattc |
31194467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 339
Target Start/End: Complemental strand, 31212861 - 31212800
Alignment:
| Q |
278 |
aatagaattttaactatacaaggaaccattattatgggtgtgtttgatttgctaaacagtaa |
339 |
Q |
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| T |
31212861 |
aatagaattttaactacacaagaaaccattatgatgggtgtgtttgatatgttaaacagtaa |
31212800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 31213163 - 31213083
Alignment:
| Q |
51 |
tctttccaataattttgatgtctaatcttttcttccataacaaacaattgtgatacacta--tcccctctccaataaattc |
129 |
Q |
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|||||| ||||| |||||||||||||||||||| | |||| ||| |||||||||||| || || ||||||||||||||| |
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| T |
31213163 |
tctttcaaataactttgatgtctaatcttttctccaataataaataattgtgatacattacgccctctctccaataaattc |
31213083 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 35319130 - 35319047
Alignment:
| Q |
48 |
ctctctttccaataattttgatgtctaatcttttcttccataacaaacaattgtgatacactatccc-ctctccaataaattcct |
131 |
Q |
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| T |
35319130 |
ctctctttccaataactt-gatgcctcatcttttcttccataacaaacaactgtgatacactttccctctttccagtaaattcct |
35319047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 380
Target Start/End: Original strand, 21202614 - 21202681
Alignment:
| Q |
313 |
gggtgtgtttgatttgctaaacagtaagaacggaacaaaacagttcaagacggaatagcacaacacaa |
380 |
Q |
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| T |
21202614 |
gggtgtgtttggtttgcaaaatagtaagtactggacaaaacagtacaagacagaacagcacaacacaa |
21202681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 380
Target Start/End: Original strand, 37865626 - 37865694
Alignment:
| Q |
312 |
tgggtgtgtttgatttgctaaacagtaagaacggaacaaaacagttcaagacggaatagcacaacacaa |
380 |
Q |
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| T |
37865626 |
tgggtgtgtttggtttgcaaaacagtaagtacgggacataacagtacaagatagaacagtacaacacaa |
37865694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 45885199 - 45885162
Alignment:
| Q |
220 |
tttcttctttttgaacattaacgaagtattttattttt |
257 |
Q |
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| T |
45885199 |
tttcttctttttgaacattcacgaagtcttttattttt |
45885162 |
T |
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