View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4134_low_15 (Length: 390)
Name: NF4134_low_15
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 5461021 - 5461242
Alignment:
| Q |
18 |
cattccaacaccgactatgtgctgcttttacagtactgttgcatgtaccacatatcccaatctcagtttttccattacaaaaacgttgttgcaaagctcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5461021 |
cattccaacaccgactatgtgctgcttttatagtactgttgcatgtaccatatatcccaatctcagtttttccattacaaaaacgttgttgcaaagctcc |
5461120 |
T |
|
| Q |
118 |
gtcgatcatccaaatttcttcctannnnnnngatctctttgtttcgggacattcctcaagaaaccataacccctctcataaagttattgtgtttttcaaa |
217 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5461121 |
gtcgataatccaaatttcttcctatttttttgatctctttgtttcgggacattcctcaagaaaccataatccctctcataaagttattgtgtttttcaaa |
5461220 |
T |
|
| Q |
218 |
tataagttagaacgaaataaga |
239 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
5461221 |
tataagttagaacgaaataaga |
5461242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 262 - 381
Target Start/End: Original strand, 5461269 - 5461380
Alignment:
| Q |
262 |
ctttgtgcaattcaattcttgtaacatacattgtaaataatgaggaaacctctatgtctgtcatggtctcatggacgatggcagcccctctttctctact |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
5461269 |
ctttgtgcaattcaattcttgtaacatacattgtaaacgatgaggaaacctctatgtctg--------tcatggacgatagcagcccctctttctctact |
5461360 |
T |
|
| Q |
362 |
tttctccaacctagaataat |
381 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
5461361 |
tttctccaacctaaaataat |
5461380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 320
Target Start/End: Original strand, 24866706 - 24866757
Alignment:
| Q |
269 |
caattcaattcttgtaacatacattgtaaataatgaggaaacctctatgtct |
320 |
Q |
| |
|
|||||||||||||||| |||||| | ||| ||||||||||||||||||||| |
|
|
| T |
24866706 |
caattcaattcttgtagtatacatcgaaaacaatgaggaaacctctatgtct |
24866757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 2248663 - 2248707
Alignment:
| Q |
270 |
aattcaattcttgtaacatacattgtaaataatgaggaaacctct |
314 |
Q |
| |
|
||||||||||||||| ||||||||| ||| |||||||||| |||| |
|
|
| T |
2248663 |
aattcaattcttgtatcatacattgaaaacaatgaggaaatctct |
2248707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University