View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4134_low_16 (Length: 366)
Name: NF4134_low_16
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 312
Target Start/End: Complemental strand, 34951848 - 34951547
Alignment:
| Q |
14 |
caaatgcaccgcatcgcaaataaggattaaaaatatgcgttctagacaattcaattctaatgtattctcgcaaggtcaaaattgaggttgcggaattcca |
113 |
Q |
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| T |
34951848 |
caaatgcaccacatcgcaaataaggattaaaaatatgtgttctagacaattcaattctaatgtattctcgcaaggtcaaaattgaggttgcggaattcca |
34951749 |
T |
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| Q |
114 |
gcaaagtcattttctatatttggcagaatagtttctcaatttcagaaat---aaaaattaggtgtatacggcaatctagtggaggtgggagatttttcag |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34951748 |
gcaaagtcattttctatatttggcagaatagtttctcaatttcagaaatttgaaaaattaggtgtatacggcaatctagtggaggtgggagatttttcag |
34951649 |
T |
|
| Q |
211 |
gatctcttcataaaaactggtttcgtagtagtgtagtgtcatgaacaaactttggctctacaaaaattgcggggtaggggtcaaatttgaagtgtataaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
34951648 |
gatctcttcataaaaactggtttcgtagtagtgtagtgtcatgaacaaactttggctctacaaaaattgtggggtaggggtcaaatttgaagtgtatgaa |
34951549 |
T |
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| Q |
311 |
gt |
312 |
Q |
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|| |
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| T |
34951548 |
gt |
34951547 |
T |
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