View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4134_low_2 (Length: 604)
Name: NF4134_low_2
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 526
Target Start/End: Complemental strand, 8986075 - 8985553
Alignment:
| Q |
11 |
cacagattggactaaaccattatgttctagccaaaacaaaagttcatgtataatct-ggaatgcacataccgatcccaacttttttatcctctttggaaa |
109 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
8986075 |
cacaaattgaactaaaccattatgttctagccaaagcaaaagtttatgtataatcttggaatgcacataccgatcccaactttgttatcctctttgaaaa |
8985976 |
T |
|
| Q |
110 |
aagatgcatctacattacatttaaatatcccttattgtggcttcaaccgttttgcccttccaacatgtattataggtgcattcactgaatt-----ccat |
204 |
Q |
| |
|
| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8985975 |
aggatgcatctacattacatttaaatatcatttgttgtggcttcaaccgttttgcccttccaacatgtattataggtgcattcactgaattgtgtaccat |
8985876 |
T |
|
| Q |
205 |
ttgagttgccaaccattggtcaagcatatgttttgctctgtccaccacattggtttcattaactttatcac--accaaatcatattatttctttgcttcc |
302 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8985875 |
ttgagttgccaaccactggtcaagcatatgttttgctctgtccaccacattggcttcattaactttatcactttccaaatcatattatttctttgcttcc |
8985776 |
T |
|
| Q |
303 |
atatactctaaaggatacag-nnnnnnnggcatcaaacaagccaatcttttttatgtaacctttgatctaccgtccatctaaattacgaaaaaggcttcc |
401 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | || |||||||||||||| ||||||||| | |
|
|
| T |
8985775 |
atatactctaaaggatacagaaaaaaagggcatcaaacaagccaatcttttttatgtaacctttgatccatcgcccatctaaattacgtaaaaggctt-c |
8985677 |
T |
|
| Q |
402 |
acacgctgctatatcgctatatcccccttgttccaactcaagaagcagattatttacattctaagtattttaaattatgaaacaagtttaatttcaagac |
501 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8985676 |
acacgctgctatatcgctat-ttccccttgttccaactcaagaagcagattatttacattctaagtattttaatttatgaaacaagtttaatttcaagac |
8985578 |
T |
|
| Q |
502 |
ttttttaaaatcaaacgtgattttt |
526 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
8985577 |
atttttaaaatcaaacgtgattttt |
8985553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 521 - 586
Target Start/End: Complemental strand, 8979862 - 8979797
Alignment:
| Q |
521 |
attttttattcaaatcatttacattcgaccactttacaaattcaaagaggattcttcttgtattac |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8979862 |
attttttattcaaatcatttacattcgaccactttacaaattcaaagatgattcttcttgtattac |
8979797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 432
Target Start/End: Complemental strand, 1324689 - 1324591
Alignment:
| Q |
332 |
catcaaacaagccaatcttttttatgtaacctttgatctaccgtccatctaaattacgaaaaaggcttccacacgctgctatatcgctatatcccccttg |
431 |
Q |
| |
|
||||| || |||||||||| || ||||||| ||||||| ||||||||||| |||| | ||||| ||||||||| || |||| ||| ||| ||||||||| |
|
|
| T |
1324689 |
catcacacgagccaatcttcttaatgtaacatttgatccaccgtccatctgaattgtg-aaaagacttccacaccctactatgtcgttat-tcccccttg |
1324592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University