View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4134_low_20 (Length: 331)

Name: NF4134_low_20
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4134_low_20
NF4134_low_20
[»] chr7 (2 HSPs)
chr7 (170-294)||(30447477-30447602)
chr7 (22-133)||(6931373-6931484)
[»] scaffold0002 (1 HSPs)
scaffold0002 (22-133)||(168900-169011)
[»] chr6 (1 HSPs)
chr6 (22-133)||(14543921-14544032)
[»] chr5 (3 HSPs)
chr5 (22-133)||(5569556-5569667)
chr5 (22-133)||(26290044-26290155)
chr5 (22-88)||(21374424-21374490)
[»] chr4 (3 HSPs)
chr4 (22-133)||(507423-507534)
chr4 (22-133)||(18041095-18041207)
chr4 (62-133)||(26394638-26394709)
[»] chr3 (2 HSPs)
chr3 (22-133)||(17222728-17222839)
chr3 (24-133)||(21595986-21596095)
[»] chr8 (1 HSPs)
chr8 (78-133)||(35705162-35705217)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 170 - 294
Target Start/End: Original strand, 30447477 - 30447602
Alignment:
Q  170 catcaccactaaaaatttc-ccataatcgtgtccctaatgtagataattgaacaaagaacaccaaccctcactgttgcccactgtctttgtttctatcct 268  Q
    ||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30447477 catcaccactaaaaatttcaccacaatcgtgtccctgatgtagataattgaacaaagaacaccaaccctcactgttgcccactgtctttgtttctatcct 30447576  T
Q  269 ctccaccaccggcgtttctctcccct 294  Q
    ||||||||||||||||||||||||||    
T  30447577 ctccaccaccggcgtttctctcccct 30447602  T

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Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 6931373 - 6931484
Alignment:
Q  22 tcctatagatttacccgttgttgattggaaactggaaaccgatattcgaaagaaacgattgctaaattacagtattgatttcggaatctgtattttttgt 121  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6931373 tcctatagatttacccgttgttgattggaaactggaaactgatattcgaaagaaacgattgctaaattacagtattgatttcggaatctgtattttttgt 6931472  T
Q  122 ggtaactgtatt 133  Q
    ||||||||||||    
T  6931473 ggtaactgtatt 6931484  T

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Target: scaffold0002 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 168900 - 169011
Alignment:
Q  22 tcctatagatttacccgttgttgattggaaactggaaaccgatattcgaaagaaacgattgctaaattacagtattgatttcggaatctgtattttttgt 121  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  168900 tcctatagatttacccgttgttgattggaaactggaaactgatattcgaaagaaacgattgctaaattacagtattgatttcggaatctgtattttttgt 168999  T
Q  122 ggtaactgtatt 133  Q
    ||||||||||||    
T  169000 ggtaactgtatt 169011  T

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Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 14543921 - 14544032
Alignment:
Q  22 tcctatagatttacccgttgttgattggaaactggaaaccgatattcgaaagaaacgattgctaaattacagtattgatttcggaatctgtattttttgt 121  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14543921 tcctatagatttacccgttgttgattggaaactggaaactgatattcgaaagaaacgattgctaaattacagtattgatttcggaatctgtattttttgt 14544020  T
Q  122 ggtaactgtatt 133  Q
    ||||||||||||    
T  14544021 ggtaactgtatt 14544032  T

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Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 5569667 - 5569556
Alignment:
Q  22 tcctatagatttacccgttgttgattggaaactggaaaccgatattcgaaagaaacgattgctaaattacagtattgatttcggaatctgtattttttgt 121  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5569667 tcctatagatttacccgttgttgattggaaactggaaactgatattcgaaagaaacgattgctaaattacagtattgatttcggaatctgtattttttgt 5569568  T
Q  122 ggtaactgtatt 133  Q
    ||||||||||||    
T  5569567 ggtaactgtatt 5569556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 26290044 - 26290155
Alignment:
Q  22 tcctatagatttacccgttgttgattggaaactggaaaccgatattcgaaagaaacgattgctaaattacagtattgatttcggaatctgtattttttgt 121  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26290044 tcctatagatttacccgttgttgattggaaattggaaactgatattcgaaagaaacgattgctaaattacagtattgatttcgaaatctgtattttttgt 26290143  T
Q  122 ggtaactgtatt 133  Q
    ||||||||||||    
T  26290144 ggtaactgtatt 26290155  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 21374490 - 21374424
Alignment:
Q  22 tcctatagatttacccgttgttgattggaaactggaaaccgatattcgaaagaaacgattgctaaat 88  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21374490 tcctatagatttacccgttgttgattggaaactggaaactgatattcgaaagaaacgattgctaaat 21374424  T

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Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 507423 - 507534
Alignment:
Q  22 tcctatagatttacccgttgttgattggaaactggaaaccgatattcgaaagaaacgattgctaaattacagtattgatttcggaatctgtattttttgt 121  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  507423 tcctatagatttacccgttgttgattggaaactggaaactgatattcgaaagaaacgattgctaaattacagtattgatttcggaatctgtattttttgt 507522  T
Q  122 ggtaactgtatt 133  Q
    ||||||||||||    
T  507523 ggtaactgtatt 507534  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 18041207 - 18041095
Alignment:
Q  22 tcctatagatttacccgttgttgattggaaactggaaaccgatattcgaaagaaacgattgctaaattacagtattgatttcggaatctgt-attttttg 120  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18041207 tcctatagatttacccgttgttgattggaaactggaaactgatattcgaaagaaacgattgctaaattacagtattgatttcggaatctgtaattttttg 18041108  T
Q  121 tggtaactgtatt 133  Q
    |||||||||||||    
T  18041107 tggtaactgtatt 18041095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 26394709 - 26394638
Alignment:
Q  62 gatattcgaaagaaacgattgctaaattacagtattgatttcggaatctgtattttttgtggtaactgtatt 133  Q
    ||||||||||||||||  ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  26394709 gatattcgaaagaaacagttgctaaattacagtattgatttcgaaatttgtattttttgtggtaactgtatt 26394638  T

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Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 17222839 - 17222728
Alignment:
Q  22 tcctatagatttacccgttgttgattggaaactggaaaccgatattcgaaagaaacgattgctaaattacagtattgatttcggaatctgtattttttgt 121  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17222839 tcctatagatttacccgttgttgattggaaactggaaactgatattcgaaagaaacgattgctaaattacagtattgatttcggaatctgtattttttgt 17222740  T
Q  122 ggtaactgtatt 133  Q
    ||||||||||||    
T  17222739 ggtaactgtatt 17222728  T

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Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 21595986 - 21596095
Alignment:
Q  24 ctatagatttacccgttgttgattggaaactggaaaccgatattcgaaagaaacgattgctaaattacagtattgatttcggaatctgtattttttgtgg 123  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  21595986 ctatagatttacccgttgttgattggaaactggaaactgatattcgaaagaaacgattgctaaattacagtattgatttcagaatttgtattttttgtgg 21596085  T
Q  124 taactgtatt 133  Q
    ||||||||||    
T  21596086 taactgtatt 21596095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 35705162 - 35705217
Alignment:
Q  78 gattgctaaattacagtattgatttcggaatctgtattttttgtggtaactgtatt 133  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||    
T  35705162 gattgctaaattacaatattgatttcagaatctgtattttttgtggtaattgtatt 35705217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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