View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4134_low_21 (Length: 330)
Name: NF4134_low_21
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 126 - 320
Target Start/End: Complemental strand, 43655158 - 43654964
Alignment:
| Q |
126 |
aagaaataatgatgcaatgcattatcttccaaattaatatactcctatgcaagagaattcattaagttcagtcgtcaaaatcattccaccatgtgatcct |
225 |
Q |
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| T |
43655158 |
aagaaatagttatgtagtgcattatcttccaaattaatatactcctatgcaagagaattcattaagttcagccgtcaaaatcattccaccatgtgatcct |
43655059 |
T |
|
| Q |
226 |
gtaaaattctttggatgggcattcgataaatgcatctaacttgatgcatatccactttgacaatgctaaaagttgaattgttagaataatctacc |
320 |
Q |
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| T |
43655058 |
gtaaaattctttggatgggcattcgataagtgcatctaatttgatgcatatccactttgacaatgctaaaagttgaattgttagaagaatgtacc |
43654964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 33
Target Start/End: Complemental strand, 43655185 - 43655155
Alignment:
| Q |
3 |
atcacagtatacaaacttcacaccataaaga |
33 |
Q |
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| T |
43655185 |
atcacagtatacaaacttcacaccataaaga |
43655155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 43654315 - 43654279
Alignment:
| Q |
245 |
cattcgataaatgcatctaacttgatgcatatccact |
281 |
Q |
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| T |
43654315 |
cattcgataagtgcatctaatttgatgcatatccact |
43654279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 126 - 320
Target Start/End: Complemental strand, 8364119 - 8363925
Alignment:
| Q |
126 |
aagaaataatgatgcaatgcattatcttccaaattaatatactcctatgcaagagaattcattaagttcagtcgtcaaaatcattccaccatgtgatcct |
225 |
Q |
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| T |
8364119 |
aagaaatagttatgtagtgcattatcttccgaattaatatactcctatgcaacagaactcattaagttcagccgtcaaaatcattccaccatgtgatcct |
8364020 |
T |
|
| Q |
226 |
gtaaaattctttggatgggcattcgataaatgcatctaacttgatgcatatccactttgacaatgctaaaagttgaattgttagaataatctacc |
320 |
Q |
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||||| || |||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| |
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| T |
8364019 |
gtaaatttttttggatgggcattcgataagtgcatctaatttgatgcatatccactttgacaatactaaaagttgaattgttagaagaatgtacc |
8363925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 2532077 - 2532106
Alignment:
| Q |
92 |
acatatattatagggtgaaaaacactatta |
121 |
Q |
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| T |
2532077 |
acatatattatagggtgaaaaacactatta |
2532106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 8364148 - 8364116
Alignment:
| Q |
1 |
ttatcacagtatacaaacttcacaccataaaga |
33 |
Q |
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| T |
8364148 |
ttatcatagtatacaaacttcacaccataaaga |
8364116 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 126 - 311
Target Start/End: Original strand, 32404453 - 32404639
Alignment:
| Q |
126 |
aagaaataatgatgcaatgcattatcttccaaattaatatactcctatgcaagagaattcattaagttcagtcgtcaaaatcattccaccatgtgatcct |
225 |
Q |
| |
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|||||||| | ||| | |||||||||||| |||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||| |
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| T |
32404453 |
aagaaatagttatgtagtgcattatcttctgaattaatatactcctatgcaagagaactcattaagttcagccatcaaaatcattccaccatgtgatcct |
32404552 |
T |
|
| Q |
226 |
gtaaaattctttggatgggcattcgataaatgcatctaa-cttgatgcatatccactttgacaatgctaaaagttgaattgttagaa |
311 |
Q |
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||| || |||||| || |||||||||||| ||||||||| |||||||| | |||||| || |||| ||| |||||||||||||||| |
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| T |
32404553 |
gtacaactctttgaataggcattcgataagtgcatctaattttgatgcaaacccacttagaaaatgttaacagttgaattgttagaa |
32404639 |
T |
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