View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4134_low_25 (Length: 293)
Name: NF4134_low_25
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_low_25 |
 | |
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| [»] scaffold0028 (2 HSPs) |
| | |
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| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0807 (1 HSPs) |
| | |
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| [»] scaffold0216 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 109868 - 110150
Alignment:
| Q |
1 |
tgcaattagccgtattagttgtttttctcttccaactcttactttcactttgaccatgtgtttataacttcctaattataaggaactaccaagtcttctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
109868 |
tgcaattagccgtattagttgtttttctcttccaactcttactttcactttgaccatgtgtttataacttcctaattataaggaactaccaagtcttctc |
109967 |
T |
|
| Q |
101 |
acaataagaaactcacgtccttcgtttt-ttctcacagtagagaaaaccatacatacttattagagaactcacatctacacaaaaaattaatttcttttt |
199 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
109968 |
acaataagaaactcacgtccttcatttttttctcacagtagagaaaaccatacatacttattagagaactcacatctacacaaaaaattatcttcttttt |
110067 |
T |
|
| Q |
200 |
tcttataaattcaagtctaggttttctgggtgcatctccagtgtatatattcgagttgttctatcacctctaacatgattcat |
282 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
110068 |
tcttataaattcaagtctaggtttcctgggtgcatctccagtgtatatattcgagttgttctgtcacctctgacatgattcat |
110150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 127450 - 127729
Alignment:
| Q |
1 |
tgcaattagccgtattagttgtttttctcttccaactcttactttcactttgaccatgtgtttataacttcctaattataaggaactaccaagtcttctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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|
| T |
127450 |
tgcaattagccgtattagttgtttttctcttccaactcttactttcactttgaccatgtgtttataacttcctaattataaggaaccaccaagccttctc |
127549 |
T |
|
| Q |
101 |
acaataagaaactcacgtccttcgttttttctcacagtagagaaaaccatacatacttatt--agagaactcacatctacacaaaaaattaatttctttt |
198 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| |||||||| |||||||| || ||||||||||||||||||||||||||||||||| ||| |
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|
| T |
127550 |
acaataagaaactcacgtccttcattttt--tcacagt--agaaaaccggacatacttgttacagagaactcacatctacacaaaaaattaatttccttt |
127645 |
T |
|
| Q |
199 |
ttcttataaattcaagtctaggttttctgggtgcatctccagtgtatatattcgagttgttctatcacctctaacatgattcat |
282 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |
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|
| T |
127646 |
ttcttataaattcaagtcaaggttttctgggtgcatctccagtgtatacattcgagttgttctgtcacctctgacatgattcat |
127729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 27107050 - 27107290
Alignment:
| Q |
1 |
tgcaattagccgtattagttgtttttctcttccaactcttactttcactttgaccatgtgtttataacttcctaattataaggaactaccaagtcttctc |
100 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||| |
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|
| T |
27107050 |
tgcaattagccatattagttgtttttctattccaacttttactttcattttgaccatgtgtttataacttcctaattataaggaaccacaaagtcttctc |
27107149 |
T |
|
| Q |
101 |
acaataagaaactcacgtccttcgttttttctcacagtagagaaaaccatacatacttatt--agagaactcacatctacacaaaaaattaatttctttt |
198 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| || |||||||||||||||||| | ||| ||||||||||||||| ||||||||||||| ||| |
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|
| T |
27107150 |
acaataagaaactcacgtccttcatttt---tcacaatatagaaaaccatacatactttatacagacaactcacatctacac-aaaaattaatttccttt |
27107245 |
T |
|
| Q |
199 |
ttcttataaattcaagtctaggttttctgggtgcatctccagtgt |
243 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
27107246 |
ttcttataaattcatgtctaggttttctgggtgcatctcctgtgt |
27107290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 48 - 260
Target Start/End: Original strand, 32424785 - 32424996
Alignment:
| Q |
48 |
ctttgaccatgtgtttataacttcctaattataaggaactaccaagtcttctcacaataa--gaaactcacgtccttcgttttttctcacagtagagaaa |
145 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||| ||||| || |||||| ||| |
|
|
| T |
32424785 |
ctttgaccatgtgttaattacttcctaattataaggaaccacca-gtcttctcacaataaaagaaactcacgtccttcattttt---catagtagaaaaa |
32424880 |
T |
|
| Q |
146 |
accatacatacttatta--gagaactcacatctacacaaaaaattaatttcttttttcttataaattcaagtctaggttttctgggtgcatctccagtgt |
243 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||| ||||||||| ||||||||||||| |||||| |||||||||| ||||||||||| |||| |
|
|
| T |
32424881 |
accatacatacttgttatagagaactcacatctacacaaaa-attaatttcctttttcttataaaatcaagtttaggttttcttggtgcatctcctgtgt |
32424979 |
T |
|
| Q |
244 |
atatattcgagttgttc |
260 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
32424980 |
atatatttgagttgttc |
32424996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 48 - 269
Target Start/End: Complemental strand, 31206952 - 31206728
Alignment:
| Q |
48 |
ctttgaccatgtgtttataacttcctaattataaggaactaccaagtcttctcacaataagaaa--ctcacgtccttcgttttttctcacagtagagaaa |
145 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||| ||||| |||| |||| ||| |
|
|
| T |
31206952 |
ctttgaccatgtgttaattacttcctaattataaggaaccaccaagtcttctcacaataaaaaaaactcacgtccttcattttt---cacaatagaaaaa |
31206856 |
T |
|
| Q |
146 |
accatacatacttatta--gagaactcacatctacacaaaaaa--ttaatttcttttttcttataaattcaagtctaggttttctgggtgcatctccagt |
241 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||| |||||||| ||||||||||||| |||||| |||||||||||||||||||||| || |
|
|
| T |
31206855 |
accatacatacttgttacagagaactcacatctacacaaaaaaaattaatttcctttttcttataaaatcaagtttaggttttctgggtgcatctcctgt |
31206756 |
T |
|
| Q |
242 |
gtatatattcgagttgttctatcacctc |
269 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
31206755 |
gtatatattcgagttgttctgtcacctc |
31206728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 161 - 269
Target Start/End: Complemental strand, 31210286 - 31210177
Alignment:
| Q |
161 |
tagagaactcacatctacacaaaaaa-ttaatttcttttttcttataaattcaagtctaggttttctgggtgcatctccagtgtatatattcgagttgtt |
259 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||| |||||||||| || |||||| |||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
31210286 |
tagagaactcacatctacccaaaaaaattaatttcctttttcttatcaaatcaagtttaggttttctaggtgcatctcctgtgtatatattcgagttgtt |
31210187 |
T |
|
| Q |
260 |
ctatcacctc |
269 |
Q |
| |
|
|| ||||||| |
|
|
| T |
31210186 |
ctgtcacctc |
31210177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 48 - 270
Target Start/End: Original strand, 44643246 - 44643469
Alignment:
| Q |
48 |
ctttgaccatgtgtttataacttcctaattataaggaactaccaagtcttctcacaataagaaa--ctcacgtccttcgttttttctcacagtagagaaa |
145 |
Q |
| |
|
||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||| ||||||| |||||||| ||| |
|
|
| T |
44643246 |
ctttgaccatgtgttaattacttcctaattatatggaaccaccaagtcttctcacaataaaaaaaactcacgtccttcattttttc--acagtagaaaaa |
44643343 |
T |
|
| Q |
146 |
accatacatacttatta--gagaactcacatctacacaaaaaattaatttcttttttcttataaattcaagtctaggttttctgggtgcatctccagtgt |
243 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||| |||| |||||||| ||||||||||||| |||||| |||||||| | |||| |||||| |||| |
|
|
| T |
44643344 |
accatacatacttgttatagagaactcacatctacacgaaaa-ttaatttcctttttcttataaaatcaagtttaggtttttttggtgaatctcctgtgt |
44643442 |
T |
|
| Q |
244 |
atatattcgagttgttctatcacctct |
270 |
Q |
| |
|
|||||||||||||||||| ||| |||| |
|
|
| T |
44643443 |
atatattcgagttgttctgtcatctct |
44643469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 6668087 - 6668049
Alignment:
| Q |
47 |
actttgaccatgtgtttataacttcctaattataaggaa |
85 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
6668087 |
actttgaccatgtgttaattacttcctaattataaggaa |
6668049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 48 - 268
Target Start/End: Complemental strand, 4242884 - 4242672
Alignment:
| Q |
48 |
ctttgaccatgtgtttataacttcctaattataaggaactaccaagtcttctcacaataagaaactcacg-tccttcgttttttctcacagtagagaaaa |
146 |
Q |
| |
|
|||||| |||||||| || |||| ||||||||||||||| ||||||||| |||||||||||||||||||| |||||| ||||| || || ||| |||| |
|
|
| T |
4242884 |
ctttgatcatgtgttaattacttactaattataaggaaccaccaagtctgctcacaataagaaactcacggtccttcattttt---caaaggaga-aaaa |
4242789 |
T |
|
| Q |
147 |
ccatacatacttattagagaactcacatctacacaaaaaattaatttcttttttcttataaattcaagtctaggttttctgggtgcatctccagtgtata |
246 |
Q |
| |
|
|||||| || ||| | | || ||||||||||||| |||||||| |||||| |||||| |||||||||||||| |||||||||||||| |||| || |
|
|
| T |
4242788 |
ccatac----ttgttacatagaacatatctacacaaaaa-ttaatttcctttttcatataaaatcaagtctaggtttcctgggtgcatctcctgtgttta |
4242694 |
T |
|
| Q |
247 |
tattcgagttgttctatcacct |
268 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
4242693 |
tattcgagttgttctgtcacct |
4242672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 448514 - 448577
Alignment:
| Q |
48 |
ctttgaccatgtgtttataacttcctaattataaggaactaccaagtcttctcacaataagaaa |
111 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| |||||| || |||||||||||||| |
|
|
| T |
448514 |
ctttgaccatgtgttaattacttcctaattataaggaaccaccaagcctgctcacaataagaaa |
448577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 14837566 - 14837497
Alignment:
| Q |
1 |
tgcaattagccgtattagttgtttttctcttccaactcttactttcactttgaccatgtgtttataacttcc |
72 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| || ||||||||| |
|
|
| T |
14837566 |
tgcaattagccgtattagtagttc--ctcttccaactcttactttccctttgaccatgttttaataacttcc |
14837497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0807 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0807
Description:
Target: scaffold0807; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 5621 - 5553
Alignment:
| Q |
48 |
ctttgaccatgtgtttataacttcctaattataaggaactaccaagtcttctcacaataagaaactcac |
116 |
Q |
| |
|
|||||||||| ||| || |||||||||||| ||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
5621 |
ctttgaccatttgtgaattacttcctaattacaaggaaccaccaaccctgctcacaataagaaactcac |
5553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0216 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0216
Description:
Target: scaffold0216; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 11906 - 11991
Alignment:
| Q |
48 |
ctttgaccatgtgtttataacttcctaattataaggaactaccaag---tcttctcacaataagaaactcac-gtccttcgttttt |
129 |
Q |
| |
|
||||||||||||||| || |||||||||||| | ||||| |||||| || ||||||||||||||||||| |||||| |||||| |
|
|
| T |
11906 |
ctttgaccatgtgttaattacttcctaattacatggaaccaccaagcgtgctgctcacaataagaaactcacggtcctttgttttt |
11991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 16366504 - 16366454
Alignment:
| Q |
232 |
catctccagtgtatatattcgagttgttctatcacctctaacatgattcat |
282 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||| | | ||||||||| |
|
|
| T |
16366504 |
catctcctgtgtatatattcgagttgttctgtcacctttgatatgattcat |
16366454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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