View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4134_low_3 (Length: 603)
Name: NF4134_low_3
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 177 - 594
Target Start/End: Original strand, 5509124 - 5509533
Alignment:
| Q |
177 |
tatattgcggtaaaatgcggtcgtatttgcagttgccattaatgtcgttgtcgaggtacctaaaaccattacattgtggctgcaattacgatatttgtta |
276 |
Q |
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|||||| | ||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5509124 |
tatattactgtaaaatgcggctgtatttgcagttgccattaatgtcgttgtcgagatatctaaaaccattacattgtggctgcaattacgatatttgtta |
5509223 |
T |
|
| Q |
277 |
ggatatatagttagtagtgggatttgacatagtataatgttatctgttagtaataggaaacctaattattcaatatcaaaatcaaaaaagaatatgttag |
376 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||| |
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| T |
5509224 |
ggatatatagttagtactgggatttgacatagtataatgttatctgttagtgatagaaaacctaattattcaatatcaaaatcaaaa-------tgttag |
5509316 |
T |
|
| Q |
377 |
aataattagaggtgtcattaggaaatgtaactagttagaggagactggtaaatatacagtttactcttgttgtgttccattgttccacactaccaaagtt |
476 |
Q |
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| T |
5509317 |
aat---tagaggtgtcattaggaaatgtaactagttagaggagactagtaaacatacagtttactcttgttgtgttccattgttccaccctaccaaagtt |
5509413 |
T |
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| Q |
477 |
ctatttctctttattcagg--tctcacgtataatttctaaactcgaaccttcattcttaccatttgtgttttaacattttatacagatattgaacctcct |
574 |
Q |
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| T |
5509414 |
ccatttctctttattcaggactctcaggtataatttctagactcgaaccttcattcttaccatttgtgttttaacattttatacagatattgaacctcct |
5509513 |
T |
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| Q |
575 |
gaagtataccttaacctctc |
594 |
Q |
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| T |
5509514 |
gaagtataccttaacctctc |
5509533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 5508923 - 5508974
Alignment:
| Q |
20 |
actcaactagaggaagtcacacaaaacattggcaagaaggaggtaattaagg |
71 |
Q |
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| T |
5508923 |
actcaactagaggaagtcacacaaaacattggcaagaaggaggtaattaagg |
5508974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 527 - 594
Target Start/End: Original strand, 5488780 - 5488847
Alignment:
| Q |
527 |
attcttaccatttgtgttttaacattttatacagatattgaacctcctgaagtataccttaacctctc |
594 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||||| || |||||| |||||||||||| |
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| T |
5488780 |
attcttaccttttgtgttttaacattttgtacagatattgaaccttctcaagtatgccttaacctctc |
5488847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 534 - 594
Target Start/End: Complemental strand, 5458225 - 5458165
Alignment:
| Q |
534 |
ccatttgtgttttaacattttatacagatattgaacctcctgaagtataccttaacctctc |
594 |
Q |
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| T |
5458225 |
ccatttatgttttaacattttgtatagatattgaacctcctcaagtataccttaacctctc |
5458165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 530 - 594
Target Start/End: Complemental strand, 5436337 - 5436273
Alignment:
| Q |
530 |
cttaccatttgtgttttaacattttatacagatattgaacctcctgaagtataccttaacctctc |
594 |
Q |
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| T |
5436337 |
cttactatttgtgttttaacatattctatagatattgaacctcctcaagcataccttaacctctc |
5436273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 5487673 - 5487721
Alignment:
| Q |
19 |
gactcaactagaggaagtcacacaaaacattggcaagaaggaggtaatt |
67 |
Q |
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| T |
5487673 |
gactcaactagaggaagtcacacacaacattggcaagaatgaggtaatt |
5487721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 5458379 - 5458332
Alignment:
| Q |
19 |
gactcaactagaggaagtcacacaaaacattggcaagaaggaggtaat |
66 |
Q |
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| T |
5458379 |
gactcaaatagaggaagtcacacacaacattggcaaacaggaggtaat |
5458332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 5447284 - 5447236
Alignment:
| Q |
19 |
gactcaactagaggaagtcacacaaaacattggcaagaaggaggtaatt |
67 |
Q |
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|||||||||||||||| ||||||| ||||||| |||| | ||||||||| |
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| T |
5447284 |
gactcaactagaggaaatcacacacaacattgacaagcaagaggtaatt |
5447236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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