View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4134_low_33 (Length: 240)
Name: NF4134_low_33
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 31042700 - 31042595
Alignment:
| Q |
1 |
aatatcaaagacctagcagaaatagtgaaactatcaccactcatatagttgaatagaataaataagataatcgagaactacaagtagtcagcacca-tag |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||| |
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| T |
31042700 |
aatatcaaagacctagcagaaatagtgaaactatcaccactcatatagttgaatagaataaataagacaattgagaactacaagtagtcagcaccattag |
31042601 |
T |
|
| Q |
100 |
agtaaa |
105 |
Q |
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|||||| |
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| T |
31042600 |
agtaaa |
31042595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 2 - 135
Target Start/End: Complemental strand, 31106345 - 31106207
Alignment:
| Q |
2 |
atatcaaagacctagcagaaatagtgaaactatcaccactcatatagttgaatagaataaataagataatcgagaactaca----agtagtcagcacca- |
96 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||||||| || || ||||||| ||| |||||||||| |
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| T |
31106345 |
atatcaaagacctagcagaaatactgaaactatcagcactcatatagttgaagagactaaataagatgatggaaaactacaagctagttgtcagcaccat |
31106246 |
T |
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| Q |
97 |
tagagtaaattattttgaaccattcaatatcaacattat |
135 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
31106245 |
tagagtaaattattttgaaccattcaatatcaacattat |
31106207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 31107988 - 31107925
Alignment:
| Q |
4 |
atcaaagacctagcagaaatagtgaaactatcaccactcatatagttgaatagaataaataaga |
67 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31107988 |
atcaaagacctagcagaaatcatgaaactatcaccactcatatagttgaagagaataaataaga |
31107925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 31095086 - 31095134
Alignment:
| Q |
4 |
atcaaagacctagcagaaatagtgaaactatcaccactcatatagttga |
52 |
Q |
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|||||||||||||||| ||||| | |||| |||||||| |||||||||| |
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| T |
31095086 |
atcaaagacctagcaggaatagaggaactgtcaccactgatatagttga |
31095134 |
T |
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