View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4134_low_36 (Length: 237)
Name: NF4134_low_36
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_low_36 |
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| [»] scaffold0028 (1 HSPs) |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 109765 - 109541
Alignment:
| Q |
1 |
aaactcaaaattacaacagatttaccctctttccacgagttaagtgatacaagatcataagatcaaaatcattaactcaatacctgctgctgca---tgg |
97 |
Q |
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| T |
109765 |
aaactcaaaattacaacagatttaccctctttccacgagttaagtgatacaagatcataagatcaaaatcattaactcgatacctgctgctgctgcgtgg |
109666 |
T |
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| Q |
98 |
taagagactgtgagtacatagattatgaagaatcttgtactcattcttcaaagcagttacaggaaagtctttggctggcttaacatcaccgaaaaattct |
197 |
Q |
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| T |
109665 |
taacagactgtgagtacatagattatgaagaatcttgtactcattcttcaaagcagttacaggaaagtctttggctggcttaacatcaccgaaaaattct |
109566 |
T |
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| Q |
198 |
tttataacagagttcctgttagatt |
222 |
Q |
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||||||||||||||||||||||||| |
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| T |
109565 |
tttataacagagttcctgttagatt |
109541 |
T |
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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 13936587 - 13936478
Alignment:
| Q |
102 |
agactgtgagtacatagattatgaagaatcttgtactcattcttcaaagcagttacaggaaagtctttggctggcttaacatcaccgaaaaattctttta |
201 |
Q |
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| T |
13936587 |
agactatgagtacaaagattatgcagaatcttgtactcattttttaaagctgttacaggaaagtctttggctggctttacattatcgaaaattttgttta |
13936488 |
T |
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| Q |
202 |
taacagagtt |
211 |
Q |
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| T |
13936487 |
tcacagagtt |
13936478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 102771 - 102681
Alignment:
| Q |
102 |
agactgtgagtacatagattatgaagaatcttgtactcattcttcaaagcagttacaggaaagtctttggctggcttaacatcaccgaaaa |
192 |
Q |
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| T |
102771 |
agactgtgagtacatagattatgcagaagcttgtactcatttttaaaggctgttacaggaaaatctttagctggttttacattaccgaaaa |
102681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 101260 - 101350
Alignment:
| Q |
102 |
agactgtgagtacatagattatgaagaatcttgtactcattcttcaaagcagttacaggaaagtctttggctggcttaacatcaccgaaaa |
192 |
Q |
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|||| ||||||||| |||||||| ||||||||||||||||| || || || ||||||||||| ||||| ||||| || |||| |||||||| |
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| T |
101260 |
agaccgtgagtacaaagattatgcagaatcttgtactcattttttaaggctgttacaggaaaatctttagctggttttacattaccgaaaa |
101350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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