View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4134_low_37 (Length: 237)
Name: NF4134_low_37
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4409854 - 4410073
Alignment:
| Q |
1 |
ctctccttacaatgaagatgctccatcaaatcgataattgctaaatgattttgatgagtcggtggactttgtcattgatttgtttgagattgttttcaaa |
100 |
Q |
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| T |
4409854 |
ctctccttacaacgaagatgctccatcaaatcgataattgctaaatgattttgatgagtcggtggactttgtcattgatttgtttgagattgttttcaaa |
4409953 |
T |
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| Q |
101 |
ctggttgatgtttccaagaatgatcaaagggataattgttatctgatgttataccaatgatcatttttatgctttattgggttcccctcatgttaatcac |
200 |
Q |
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| T |
4409954 |
ctggttgatgtttccaagaatgatcaaagtgataattgttatctgatgttataccaatgatcatttttatgctttattgggttcccctcatgttaatcac |
4410053 |
T |
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| Q |
201 |
ttccctacgaggcctgtacc |
220 |
Q |
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| T |
4410054 |
ttccctacgaggcctgtacc |
4410073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 45121910 - 45121985
Alignment:
| Q |
111 |
tttccaagaatgatcaaagggataattgttatctgatgttataccaa-tgatcatttttatgctttattgggttccc |
186 |
Q |
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| T |
45121910 |
tttccaacaatgatcaaagggataattgctatct-aggttataccaagggatcttttttatgctttactgggttccc |
45121985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 12037563 - 12037521
Alignment:
| Q |
63 |
tggactttgtcattgatttgtttgagattgttttcaaactggt |
105 |
Q |
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| T |
12037563 |
tggactttgtcattgatttgtttaagattgttttcaagctggt |
12037521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 11858750 - 11858702
Alignment:
| Q |
63 |
tggactttgtcattgatttgtttgagattgttttcaaactggttgatgt |
111 |
Q |
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||||||||||||||||||||| ||||| ||||||||| |||| |||||| |
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| T |
11858750 |
tggactttgtcattgatttgtgtgagaatgttttcaagctgggtgatgt |
11858702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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