View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4134_low_38 (Length: 225)
Name: NF4134_low_38
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 20072582 - 20072378
Alignment:
| Q |
11 |
atcatcattaaagaaaaaatccacaaaagaatattagatagtgcattcatataaatttacagaaagtgtaattcagttttgattattaaattgacgtaag |
110 |
Q |
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| T |
20072582 |
atcatcattaaagaaaaaatccacagaagaatattagatagtgcattcatataagtttacagaaagtgtaattcagttttgattattaaattgacgtaag |
20072483 |
T |
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| Q |
111 |
tttcacatgcattgaaattaatgaatatcttcacatcttaagattac-------tacaacaaatataccttgttgttgggtttgagacaaaagcaaaatt |
203 |
Q |
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| T |
20072482 |
tttcacatgcattgaaattaatgaatatcttcacatcttaagagtactacaacatacaacaaatataccttgttgttgggtttgagacaaaagcaaaatt |
20072383 |
T |
|
| Q |
204 |
ggaat |
208 |
Q |
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||||| |
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| T |
20072382 |
ggaat |
20072378 |
T |
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