View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4134_low_39 (Length: 222)
Name: NF4134_low_39
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 27348733 - 27348541
Alignment:
| Q |
18 |
acaacagtgttattgaatttgtgacattatctagagttttaactgttaaaaagatcccttcgatcgatgtgattggtgtgccaaatttgttgaatggtga |
117 |
Q |
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| T |
27348733 |
acaacagtgttattgaatttgtgacattatctggagttttaactgttaaaaagatcccttcgatcgatgtggttggtgtgccaaatttgctgaatggtaa |
27348634 |
T |
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| Q |
118 |
agctccaccggttggattttacattgagttggattttcctgcttactatcctgttacaaaattatgccatgatgacatttcaatcattgatga |
210 |
Q |
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| T |
27348633 |
agctcctccggttggattttacattgagttggattttcctgcttattatcctattacaaaattataccacgatgacatttcaatcattgatga |
27348541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 27322105 - 27321913
Alignment:
| Q |
18 |
acaacagtgttattgaatttgtgacattatctagagttttaactgttaaaaagatcccttcgatcgatgtgattggtgtgccaaatttgttgaatggtga |
117 |
Q |
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| T |
27322105 |
acaacagtgttattgaatttgtgacactatctggagttttaactgttaaaaagatcccttcgatcgatgtggttggtgtgccaaatttgctgaatggtaa |
27322006 |
T |
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| Q |
118 |
agctccaccggttggattttacattgagttggattttcctgcttactatcctgttacaaaattatgccatgatgacatttcaatcattgatga |
210 |
Q |
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| T |
27322005 |
agctcctccggttgaattttacattgagttggattttcctgcttattatcctattacaaaattataccacgatgacatttcaatcattgatga |
27321913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 27265433 - 27265241
Alignment:
| Q |
18 |
acaacagtgttattgaatttgtgacattatctagagttttaactgttaaaaagatcccttcgatcgatgtgattggtgtgccaaatttgttgaatggtga |
117 |
Q |
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||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| |||||||| | |
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| T |
27265433 |
acaacggtgttattaaatttgtgacattatctggagttttaactgttaaaaagatcccatcgatcgatgtggttggtgtaccaaatttgctgaatggtaa |
27265334 |
T |
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| Q |
118 |
agctccaccggttggattttacattgagttggattttcctgcttactatcctgttacaaaattatgccatgatgacatttcaatcattgatga |
210 |
Q |
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| T |
27265333 |
agctcctccggttggattttacattgagttggattttcctgcttattatcctattacaaaattataccacgatgacatttcaatcattgatga |
27265241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 25 - 163
Target Start/End: Complemental strand, 32164979 - 32164844
Alignment:
| Q |
25 |
tgttattgaatttgtgacattatctagagttttaactgttaaaaagatcccttcgatcgatgtgattggtgtgccaaatttgttgaatggtgaagctcca |
124 |
Q |
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| T |
32164979 |
tgttattgaatttgtgacactgtctggagttttaacagttagaaagatcccatcgatggatgtgactggtgtgccgaatttgctgaatagtgaagctgca |
32164880 |
T |
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| Q |
125 |
ccggttggattttacattgagttggattttcctgcttac |
163 |
Q |
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| T |
32164879 |
---gctggattttatattgaaatggattttcctgcttac |
32164844 |
T |
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