View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4134_low_7 (Length: 536)

Name: NF4134_low_7
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4134_low_7
NF4134_low_7
[»] chr3 (2 HSPs)
chr3 (19-526)||(281173-281681)
chr3 (55-202)||(13916859-13917006)
[»] chr1 (3 HSPs)
chr1 (41-391)||(24514551-24514903)
chr1 (39-202)||(18380728-18380885)
chr1 (52-191)||(19735269-19735408)
[»] chr2 (4 HSPs)
chr2 (267-436)||(20177790-20177959)
chr2 (87-249)||(17401918-17402079)
chr2 (126-254)||(20181517-20181644)
chr2 (195-271)||(18592520-18592596)
[»] chr4 (3 HSPs)
chr4 (21-252)||(6096023-6096254)
chr4 (21-202)||(19563437-19563618)
chr4 (314-461)||(6096258-6096404)
[»] chr6 (1 HSPs)
chr6 (21-202)||(9296735-9296916)


Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 19 - 526
Target Start/End: Original strand, 281173 - 281681
Alignment:
Q  19 atatgaagggggatgagttgattgggtctctataaacctttgaatttgctatcaatgataggactgtaaagaagaacaaaagcattgctttcatatccaa 118  Q
    ||||||||| | |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  281173 atatgaaggtgaatgagttgattgagtctctataaacctttgaatttgatatcaatgataggactgtaaagaagaacaaaagcattgctttcatatccaa 281272  T
Q  119 tattgatgaggaagatgttcattgtaatgtggatactaatgaaagtgtttgagattcaattgtgcttcttggtagacaattcaataaggttctgaaaaga 218  Q
    || |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  281273 tactgatgaggaagatgttcattgtaatgtggatactgatgaaagtgtttcagattcaattgtgcttcttggtagacgattcaataaggttctgaaaaga 281372  T
Q  219 atgtacaggaagtcaaaacctaatgtcaagaacatgcagctcgacattagtaaaatcagtgggttccaacgcaaggaaataactaatgagaagaaaaacc 318  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |    
T  281373 atgtacaggaagtcaaaacctaatgtcaagaatatgcagctcgacattagtaaaataagtgggttccaacgcaaggaaagaactaatgagaagaaaaatc 281472  T
Q  319 aagggaaaggaattcagtgtaatggatgtgaaggttttggccacatcatatcagaatgtcgtatgtacctcaataattag-aaaaaggggttatttgtct 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  281473 aagggaaaggaattcagtgtaatggatgtgaaggttttggccacatcatatcagaatgtcgtatgtacctcaataattagaaaaaaggggttatttgtct 281572  T
Q  418 catggtcagataatgattcagaagaaagaacctgatgatgaaactgctaacaagtcactactcttactggtaaatgtgattcttatggagattacagtaa 517  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  281573 catggtcagataatgattcagaagaaagaacctgatgatgaaagtgctaacaagtcactgctcttactggtaaatgtgattctgatggagattacagtaa 281672  T
Q  518 tgatgatgt 526  Q
    |||||||||    
T  281673 tgatgatgt 281681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 202
Target Start/End: Complemental strand, 13917006 - 13916859
Alignment:
Q  55 cctttgaatttgctatcaatgataggactgtaaagaagaacaaaagcattgctttcatatccaatattgatgaggaagatgttcattgtaatgtggatac 154  Q
    ||||| |||| ||||||||||||||  ||  ||||||||| |||| ||| |||||||| ||||| | ||||||||||| || ||| ||| || || | ||    
T  13917006 ccttttaattagctatcaatgatagatctcaaaagaagaagaaaaacatagctttcatttccaacactgatgaggaagttgctcaatgtgatatgaagac 13916907  T
Q  155 taatgaaagtgtttgagattcaattgtgcttcttggtagacaattcaa 202  Q
    | ||||||||  || |||| || |||||| |||||||| | |||||||    
T  13916906 tgatgaaagtactttagatgcatttgtgcgtcttggtaaagaattcaa 13916859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 41 - 391
Target Start/End: Complemental strand, 24514903 - 24514551
Alignment:
Q  41 tgggtctctataaacctttgaatttgctatcaatgataggactgtaaagaagaacaaaagcattgctttcatatccaatattgatgaggaagatgttcat 140  Q
    |||||||| | |||| |||||||| ||||| |||||||| ||||  ||||| ||||||| |||||||||||||||||| | |||||||||||| || ||     
T  24514903 tgggtctcaacaaacttttgaattggctataaatgatagaactgagaagaataacaaaaacattgctttcatatccaacactgatgaggaagaagtacaa 24514804  T
Q  141 tgtaatgtggatactaatgaaagtgtttgagattcaattgtgcttcttggtagacaattcaataaggttctgaaaagaatgtacaggaagtcaaaaccta 240  Q
    ||| ||||||||||| ||| |||| ||| |||| |||||| |||||| || || ||||||||||||||| ||||||| |||  || |||||||| ||  |    
T  24514803 tgtgatgtggatactgatgcaagtttttcagatgcaattgcgcttctcggaaggcaattcaataaggttttgaaaaggatggtcaagaagtcaagactaa 24514704  T
Q  241 atgtcaagaacatgcagctcgacattagta--aaatcagtgggttccaacgcaaggaaataactaatgagaagaaaaaccaagggaaaggaattcagtgt 338  Q
    ||||||||||||||||| |  |||| ||||  ||  || |||||| || || || |  | |||| |||||||  |||||||||||||||||||||| |||    
T  24514703 atgtcaagaacatgcagttgaacatcagtaagaacacaatgggtttcatcgtaaagggagaactgatgagaaagaaaaccaagggaaaggaattcaatgt 24514604  T
Q  339 aatggatgtgaaggttttggccacatcatatcagaatgtcgtatgtacctcaa 391  Q
     ||| ||||||||||||||| ||||||| ||||||||||| | ||| ||||||    
T  24514603 catgaatgtgaaggttttggtcacatcaaatcagaatgtcatgtgttcctcaa 24514551  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 39 - 202
Target Start/End: Original strand, 18380728 - 18380885
Alignment:
Q  39 attgggtctctataaacctttgaatttgctatcaatgataggactgtaaagaagaacaaaagcattgctttcatatccaatattgatgaggaagatgttc 138  Q
    |||||||| ||  ||||||||||||| | ||||||||||||   || ||||||||| ||||||||  ||||| | ||||| |||||||||||| ||||||    
T  18380728 attgggtcacttcaaacctttgaattagatatcaatgatagatatgaaaagaagaagaaaagcatatctttcgtttccaacattgatgaggaaaatgttc 18380827  T
Q  139 attgtaatgtggatactaatgaaagtgtttgagattcaattgtgcttcttggtagacaattcaa 202  Q
    | |||      || ||| |||||||| ||  |||| ||||||||| |||||||||| |||||||    
T  18380828 aatgt------gaaactgatgaaagtattccagatgcaattgtgcgtcttggtagagaattcaa 18380885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 52 - 191
Target Start/End: Original strand, 19735269 - 19735408
Alignment:
Q  52 aaacctttgaatttgctatcaatgataggactgtaaagaagaacaaaagcattgctttcatatccaatattgatgaggaagatgttcattgtaatgtgga 151  Q
    |||| |||||||| |||| |||||||||   || ||||||||| ||||||||  ||||| | ||||| | |||||| ||||||||||| ||| |  ||||    
T  19735269 aaacatttgaattagctaccaatgatagatatgaaaagaagaagaaaagcataactttcgtttccaacactgatgatgaagatgttcaatgtgaaatgga 19735368  T
Q  152 tactaatgaaagtgtttgagattcaattgtgcttcttggt 191  Q
     ||| |||||||| ||| |||| ||||||||| |||||||    
T  19735369 aactgatgaaagtatttcagatgcaattgtgcatcttggt 19735408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 267 - 436
Target Start/End: Complemental strand, 20177959 - 20177790
Alignment:
Q  267 agtaaaatcagtgggttccaacgcaaggaaataactaatgagaagaaaaaccaagggaaaggaattcagtgtaatggatgtgaaggttttggccacatca 366  Q
    ||||||| |||||||||||||||||| ||||  | |||||||||| |||||||||||||| |||||  |||| |||||||||||||||||||||||||||    
T  20177959 agtaaaaacagtgggttccaacgcaaagaaaagattaatgagaagcaaaaccaagggaaatgaattatgtgtcatggatgtgaaggttttggccacatca 20177860  T
Q  367 tatcagaatgtcgtatgtacctcaataattagaaaaaggggttatttgtctcatggtcagataatgattc 436  Q
     ||||||||||| || ||| ||||| ||  ||||||||||| | | |||||| ||||||||| |||||||    
T  20177859 aatcagaatgtcctacgtatctcaagaaacagaaaaaggggatgtctgtctcttggtcagatgatgattc 20177790  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 87 - 249
Target Start/End: Complemental strand, 17402079 - 17401918
Alignment:
Q  87 aagaagaacaaaagcattgctttcatatccaatattgatgaggaagatgttcattgtaatgtggatactaatgaaagtgtttgagattcaattgtgcttc 186  Q
    |||||||| ||||| || |||||||||||||| | | |||||||||||||||| ||| |  |||||  | |||||||  ||| |||| ||||||||||||    
T  17402079 aagaagaaaaaaagtatagctttcatatccaacactaatgaggaagatgttcaatgtgaattggattttgatgaaagaattttagatgcaattgtgcttc 17401980  T
Q  187 ttggtagacaattcaataaggttctgaaaagaatgtacaggaagtcaaaacctaatgtcaaga 249  Q
    |||||||  ||||||| |||||| |||||||||||  |||||| ||||  | |||||||||||    
T  17401979 ttggtag-gaattcaacaaggttttgaaaagaatggccaggaattcaaggcataatgtcaaga 17401918  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 126 - 254
Target Start/End: Complemental strand, 20181644 - 20181517
Alignment:
Q  126 gaggaagatgttcattgtaatgtggatactaatgaaagtgtttgagattcaattgtgcttcttggtagacaattcaataaggttctgaaaagaatgtaca 225  Q
    ||||||||||| || | |||||||||||||| ||||||| ||| ||||  ||||||| |||||||  | ||||| || |||||| ||||||||||| ||     
T  20181644 gaggaagatgtgcaatctaatgtggatactagtgaaagtttttcagatgtaattgtgattcttggatggcaatttaagaaggttttgaaaagaatggac- 20181546  T
Q  226 ggaagtcaaaacctaatgtcaagaacatg 254  Q
    ||||||| | |||||||||||||||||||    
T  20181545 ggaagtctagacctaatgtcaagaacatg 20181517  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 18592596 - 18592520
Alignment:
Q  195 caattcaataaggttctgaaaagaatgtacaggaagtcaaaacctaatgtcaagaacatgcagctcgacattagtaa 271  Q
    |||||||||||||| ||||| |||||| | |||||| ||| ||| |||||||||||||||    |||||||||||||    
T  18592596 caattcaataaggtgctgaagagaatggataggaagccaagaccaaatgtcaagaacatgtcattcgacattagtaa 18592520  T

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Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 21 - 252
Target Start/End: Original strand, 6096023 - 6096254
Alignment:
Q  21 atgaagggggatgagttgattgggtctctataaacctttgaatttgctatcaatgataggactgtaaagaagaacaaaagcattgctttcatatccaata 120  Q
    ||||||| ||||||  | |||||||| ||  ||||||||||||| |||||||||||||  |||| ||||||| |||||||||||| |||||||||||| |    
T  6096023 atgaaggtggatgaacttattgggtcacttcaaacctttgaattagctatcaatgatataactgaaaagaaggacaaaagcattgatttcatatccaaca 6096122  T
Q  121 ttgatgaggaagatgttcattgtaatgtggatactaatgaaagtgtttgagattcaattgtgcttcttggtagacaattcaataaggttctgaaaagaat 220  Q
     |||||||||||||||  | |   || ||||||||||||||| |  || | || |||||||||||||||| |  | ||||||||||||  |||| |  ||    
T  6096123 ctgatgaggaagatgtataattagatatggatactaatgaaatttattcacatgcaattgtgcttcttggaatgcgattcaataaggtgttgaagatgat 6096222  T
Q  221 gtacaggaagtcaaaacctaatgtcaagaaca 252  Q
    | |||||||||||| ||| |||||||| ||||    
T  6096223 ggacaggaagtcaagaccaaatgtcaaaaaca 6096254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 19563618 - 19563437
Alignment:
Q  21 atgaagggggatgagttgattgggtctctataaacctttgaatttgctatcaatgataggactgtaaagaagaacaaaagcattgctttcatatccaata 120  Q
    ||||||| ||||||  | |||||||| ||  ||||| ||||||| ||||||||||||||  ||  ||||||||| | ||||||   |||| | ||||| |    
T  19563618 atgaaggtggatgaactaattgggtcacttcaaaccattgaattagctatcaatgatagatcttaaaagaagaagataagcataaatttcgtttccaaca 19563519  T
Q  121 ttgatgaggaagatgttcattgtaatgtggatactaatgaaagtgtttgagattcaattgtgcttcttggtagacaattcaa 202  Q
    ||||||||||||||||||| ||| |  |||| ||| |||||||| ||| |||| ||||||||  |||||||||| |||||||    
T  19563518 ttgatgaggaagatgttcaatgtgaaatggagactgatgaaagtattttagatgcaattgtgtgtcttggtagagaattcaa 19563437  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 314 - 461
Target Start/End: Original strand, 6096258 - 6096404
Alignment:
Q  314 aaaccaagggaaaggaattcagtgtaatggatgtgaaggttttggccacatcatatcagaatgtcgtatgtacctcaataattagaaaaaggggttattt 413  Q
    |||||||||||||  |||||| ||| ||| |||||| |||||||| | ||||| ||||||||||| || ||  ||||| ||  ||||||| | ||| |||    
T  6096258 aaaccaagggaaacaaattcaatgtcatgaatgtgagggttttggtcgcatcaaatcagaatgtcctacgtttctcaagaaagagaaaaatgagttgttt 6096357  T
Q  414 gtctcatggtcagataatgattcagaagaaagaacctgatgatgaaac 461  Q
    ||||| |||||| || ||||||||||||  ||| ||||||||||||||    
T  6096358 gtctcttggtcatatgatgattcagaag-gagagcctgatgatgaaac 6096404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 9296916 - 9296735
Alignment:
Q  21 atgaagggggatgagttgattgggtctctataaacctttgaatttgctatcaatgataggactgtaaagaagaacaaaagcattgctttcatatccaata 120  Q
    ||||||| ||||||  | |||||||| ||  ||||| ||||||| ||||||||||||||   || ||||||||| |||| ||| |  ||| | ||||| |    
T  9296916 atgaaggtggatgaactaattgggtcacttcaaaccattgaattagctatcaatgatagatgtgaaaagaagaagaaaaacatagtcttcgtttccaaca 9296817  T
Q  121 ttgatgaggaagatgttcattgtaatgtggatactaatgaaagtgtttgagattcaattgtgcttcttggtagacaattcaa 202  Q
     | |||||||||||||||| ||| || |||| ||| |||||||| ||| |||| || |||||| |||||||||| |||||||    
T  9296816 ctaatgaggaagatgttcaatgtgatatggagactgatgaaagtattttagatgcatttgtgcgtcttggtagagaattcaa 9296735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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