View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4134_low_9 (Length: 489)
Name: NF4134_low_9
Description: NF4134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4134_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 47894700 - 47894211
Alignment:
| Q |
1 |
gaaaatggagacaagaatacaaagttaatggaagaaaacaaaacaatgaactgatgaacaaaatcaaatgccacccaatcttcaacaaatccttaataca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47894700 |
gaaaatggagacaagaatacaaagttaatggaagaaaacaaaacaatgaactgatgaacaaaatcaaatgccacccaatcttcaacaaatccttaataca |
47894601 |
T |
|
| Q |
101 |
agaagaaacctaaatgtcaaaaggaattaagaaaacagatacagagacaccaaaaagccatactcctcaacaatgcacagagagctgttttatttctttt |
200 |
Q |
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| T |
47894600 |
agaagaaacctaaatgtcaaaaggaattaagaaaacagatatagagacaccaaaatgccatactcctcaacaatgcacagagagctgttttatttctttt |
47894501 |
T |
|
| Q |
201 |
tgcatcattcaactatacaaagtaaaatcatactcttccatccagattcagttaacaagttccgcaacccatccaatatcagggacagggaccgaaacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47894500 |
tgcatcattcaactatacaaagtaaaatcatactcttccatccagattcagttaacaagttccgcaacccatccaatatcagggacagggaccgaaacaa |
47894401 |
T |
|
| Q |
301 |
caccatcgtttgagttcaacctaccaaatttcgcatagattttggctctaagatctcttcctgattccaccctctccataccaaccccttcatagtttga |
400 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47894400 |
caccatcgtttgagttcaacctaccaaatttctcatagattttggctctaagatctcttcctgattccaccctctccataccaaccccttcatagtttga |
47894301 |
T |
|
| Q |
401 |
tggaagactcaaaaaaccacctcgtgg------------------agaacccatcttagacaccggactccattcatcaaccctaacact |
472 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47894300 |
tggaagactcaaaaaaccacctcgtggtcgtggagaaccaaacacagaacccatcttagacaccggactccattcatcaaccctaacact |
47894211 |
T |
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