View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4135_high_1 (Length: 436)
Name: NF4135_high_1
Description: NF4135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4135_high_1 |
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| [»] scaffold0650 (1 HSPs) |
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Alignment Details
Target: scaffold0650 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: scaffold0650
Description:
Target: scaffold0650; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 5 - 419
Target Start/End: Complemental strand, 7738 - 7316
Alignment:
| Q |
5 |
actgaaatgaaggtcataatcgacgaagttgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacaaggaaatctccttcnnnnnnnntt |
104 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
7738 |
actgaaaagaaggtcataatcgacgaagctgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacgaggaaatctccttcagaaaaaatt |
7639 |
T |
|
| Q |
105 |
ggaagaggaaattgtgagttgtgacgattaatatatttatagtgaagcacaatgacagtgtgttttccatttttcacaagtagcagcaaggtactcttag |
204 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |||||| |
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| T |
7638 |
ggaagaggaaattgtgagttgtgacaattaatatatttatagtgaaccacaatgacagtgcgtttttcatttttcacaagtagcagcaaggtagtcttag |
7539 |
T |
|
| Q |
205 |
aactcaaacaacacgtacagcaaccgcaccaatatatttgcacaccaatttgaataggttgacacggcaaggtgtttgtttaattccaatcaatggaaat |
304 |
Q |
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| T |
7538 |
aactcaaacaacacgtacagcaaccgcaccaatatatttgcacaccaatttgaatgggttgacacggctaggtgtttgtttaattccaatcaatggaaat |
7439 |
T |
|
| Q |
305 |
tcaatgaaaaccatgcagtaatatgga--------ttatatatatatggggtaccagcaatctttgtcgaaaggaagcaatacacatgaataagcataat |
396 |
Q |
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| T |
7438 |
tcaatgaaaatcatgcggcaatatggaaaatatatatatatatatatggggtaccagcaatctatgtcgcaaggaagcaatacacatgaataagcataat |
7339 |
T |
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| Q |
397 |
taaacagcaaggggacttatgaa |
419 |
Q |
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| T |
7338 |
taaacagcaaggggacttatgaa |
7316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 5 - 419
Target Start/End: Complemental strand, 18432641 - 18432219
Alignment:
| Q |
5 |
actgaaatgaaggtcataatcgacgaagttgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacaaggaaatctccttcnnnnnnnntt |
104 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
18432641 |
actgaaaagaaggtcataatcgacgaagctgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacgaggaaatctccttcagaaaaaatt |
18432542 |
T |
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| Q |
105 |
ggaagaggaaattgtgagttgtgacgattaatatatttatagtgaagcacaatgacagtgtgttttccatttttcacaagtagcagcaaggtactcttag |
204 |
Q |
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| T |
18432541 |
ggaagaggaaattgtgagttgtgacaattaatatatttatagtgaaccacaatgacagtgcgtttttcatttttcacaagtagcagcaaggtagtcttag |
18432442 |
T |
|
| Q |
205 |
aactcaaacaacacgtacagcaaccgcaccaatatatttgcacaccaatttgaataggttgacacggcaaggtgtttgtttaattccaatcaatggaaat |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
18432441 |
aactcaaacaacacgtacagcaaccgcaccaatatatttgcacaccaatttgaatgggttgacacggctaggtgtttgtttaattccaatcaatggaaat |
18432342 |
T |
|
| Q |
305 |
tcaatgaaaaccatgcagtaatatgga--------ttatatatatatggggtaccagcaatctttgtcgaaaggaagcaatacacatgaataagcataat |
396 |
Q |
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|||||||||| ||||| | |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
18432341 |
tcaatgaaaatcatgcggcaatatggaaaatatatatatatatatatggggtaccagcaatctatgtcgcaaggaagcaatacacatgaataagcataat |
18432242 |
T |
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| Q |
397 |
taaacagcaaggggacttatgaa |
419 |
Q |
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| T |
18432241 |
taaacagcaaggggacttatgaa |
18432219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 6 - 186
Target Start/End: Complemental strand, 18445006 - 18444826
Alignment:
| Q |
6 |
ctgaaatgaaggtcataatcgacgaagttgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacaaggaaatctccttcnnnnnnnnttg |
105 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
18445006 |
ctgaaaagaaggtcataatcgacgaagttgtgagcgaaaaatcaatgtaacaaataaatattaaatacttgtaggaggaaatctccttcaccaaaaattg |
18444907 |
T |
|
| Q |
106 |
gaagaggaaattgtgagttgtgacgattaatatatttatagtgaagcacaatgacagtgtgttttccatttttcacaagta |
186 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |
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| T |
18444906 |
gaagaggaaattgtgagttgtgacaattaatatatttatagtgaaccacaatgacagtgcgtttttcatttttcacaagta |
18444826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 5 - 186
Target Start/End: Complemental strand, 18436833 - 18436653
Alignment:
| Q |
5 |
actgaaatgaaggtcataatcgacgaagttgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacaaggaaatctccttcnnnnnnnntt |
104 |
Q |
| |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || |
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| T |
18436833 |
actgaaaagaaggtcataatcgacgaagctgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacgaggaaa-ctccttcaccgaaaatt |
18436735 |
T |
|
| Q |
105 |
ggaagaggaaattgtgagttgtgacgattaatatatttatagtgaagcacaatgacagtgtgttttccatttttcacaagta |
186 |
Q |
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| T |
18436734 |
ggaagaggaaattgtgagttgtgacaattaatatatttatagtgatccacaatgacagtgcgtttttcatttttcacaagta |
18436653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 18441100 - 18440928
Alignment:
| Q |
14 |
aaggtcataatcgacgaagttgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacaaggaaatctccttcnnnnnnnnttggaagagga |
113 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||| ||||||||||| |
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| T |
18441100 |
aaggtgataatcgacgaaggtgtaagcgaaaaatcaatgtaacaaataaatattaaatacttatacgaggaaatcttcttcaccgaaaattggaagagga |
18441001 |
T |
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| Q |
114 |
aattgtgagttgtgacgattaatatatttatagtgaagcacaatgacagtgtgttttccatttttcacaagta |
186 |
Q |
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|||||||||||||||| ||||||||||||||||||| || |||||||||| ||||| ||||||||||||||| |
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| T |
18441000 |
aattgtgagttgtgacaattaatatatttatagtgatccataatgacagtgcgtttttcatttttcacaagta |
18440928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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