View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4135_high_6 (Length: 282)

Name: NF4135_high_6
Description: NF4135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4135_high_6
NF4135_high_6
[»] chr1 (1 HSPs)
chr1 (1-282)||(51341598-51341895)


Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 51341598 - 51341895
Alignment:
Q  1 caaatctcagctgcaaatctaatcatatccataaaacaaaatggtaacaattaatatcaacttcaggttgtatattatttaaacaatatgtctattgaga 100  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||    
T  51341598 caaatctcagccacaaatctaatcatatccataaaacaaaatggtaacaattaatatcaacttcaggttgtatattattaagacaatatgtctcttgaga 51341697  T
Q  101 ttac----------------aaattcaatcacaatctagtataaatttttcattccaagtaaaaaagaggccagttatagtcaatccccattatggacaa 184  Q
    ||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51341698 ttacaaattcaatcacttacaaattcaatcacaatctagtataaatttttcattccaagtaaaaaagaggccagttatagtcaatccccattatggacaa 51341797  T
Q  185 aaccatagctgcacattcttggaaaaagactcgtagcaaacgcgcagcgatgtataaagaataataggaaaagcaaacaaaggcgaaagctggcataa 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  51341798 aaccatagctgcacattcttggaaaaagactcgtagcaaacgcgcagcgatgtataaagaataataggaaaagcaaacaaaggcgaaggctggcataa 51341895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University