View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4135_high_8 (Length: 252)
Name: NF4135_high_8
Description: NF4135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4135_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 3216573 - 3216325
Alignment:
| Q |
1 |
ttcgttagttgctcagctggaaattttggtcctgattatggtacaacgtctaatgatgcaccatggattctaactgttggtgctagcacaaccgatagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3216573 |
ttcgttagttgctcagctggaaattttggtcctgattatggtacaacgtctaatgaagcaccatggattctaactgttggtgctagcacaactgatagaa |
3216474 |
T |
|
| Q |
101 |
aaatagaagcaatagctaaacttggcaacggggaaaaatatattggagaatcagtgtttcaaccaaaagagtttgcatcaacactgttgccacttgtgta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3216473 |
aaatagaagcaatagctaaacttggcaacggggaaaaatatattggagaatcagtgtttcaaccaaaagagtttgcatcaacactgttgccacttgtgta |
3216374 |
T |
|
| Q |
201 |
tgcaggttctgttaatataagtgataattacattgccttctgtgatcct |
249 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||| |||| |
|
|
| T |
3216373 |
tgcaggttctgttaatataagtgataattccattgccttttgtggtcct |
3216325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 3208631 - 3208386
Alignment:
| Q |
4 |
gttagttgctcagctggaaattttggtcctgattatggtacaacgtctaatgatgcaccatggattctaactgttggtgctagcacaaccgatagaaaaa |
103 |
Q |
| |
|
|||||||| ||||||| ||||| |||||| ||||||||| ||||||||| |||||||||||||||||||||||||| ||||||| || ||||||| |
|
|
| T |
3208631 |
gttagttgttcagctgcaaattcaggtcctttttatggtactttgtctaatgaagcaccatggattctaactgttggtgccagcacaattgacagaaaaa |
3208532 |
T |
|
| Q |
104 |
tagaagcaatagctaaacttggcaacggggaaaaatatattggagaatcagtgtttcaaccaaaagagtttgcatcaacactgttgccacttgtgtatgc |
203 |
Q |
| |
|
| || ||| ||||||| |||||| ||||| | ||||| ||||||||||||| || ||||||||||| |||||||| ||| | ||||||||||||||||| |
|
|
| T |
3208531 |
ttgaggcagtagctaagcttggcgacgggacagaatatcttggagaatcagttttccaaccaaaagactttgcatcgacattattgccacttgtgtatgc |
3208432 |
T |
|
| Q |
204 |
aggttctgttaatataagtgataattacattgccttctgtgatcct |
249 |
Q |
| |
|
|||||| |||||| ||||||| ||| ||||||||| |||| |||| |
|
|
| T |
3208431 |
aggttcaattaatacaagtgatgattccattgccttttgtggtcct |
3208386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 3202657 - 3202412
Alignment:
| Q |
4 |
gttagttgctcagctggaaattttggtcctgattatggtacaacgtctaatgatgcaccatggattctaactgttggtgctagcacaaccgatagaaaaa |
103 |
Q |
| |
|
|||||||| || |||||||||| |||||| | |||||||| | ||||||| |||||||||||| ||||||||||||| ||||||| || ||||||| |
|
|
| T |
3202657 |
gttagttgttctgctggaaattcaggtccttttcatggtacattggctaatgaagcaccatggattttaactgttggtgccagcacaattgacagaaaaa |
3202558 |
T |
|
| Q |
104 |
tagaagcaatagctaaacttggcaacggggaaaaatatattggagaatcagtgtttcaaccaaaagagtttgcatcaacactgttgccacttgtgtatgc |
203 |
Q |
| |
|
|||| ||| ||||||| ||||| | ||| ||||| | ||||||||||| || ||||||||||| |||||||||||| | ||||||||||||||||| |
|
|
| T |
3202557 |
tagaggcagtagctaagcttggggatgggacggaatatctcggagaatcagttttccaaccaaaagactttgcatcaacattattgccacttgtgtatgc |
3202458 |
T |
|
| Q |
204 |
aggttctgttaatataagtgataattacattgccttctgtgatcct |
249 |
Q |
| |
|
|||| | |||| | ||||||| ||| ||||||||| ||| ||||| |
|
|
| T |
3202457 |
aggtgcaattaacacaagtgatgatttcattgccttttgtaatcct |
3202412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University