View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4135_high_9 (Length: 238)
Name: NF4135_high_9
Description: NF4135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4135_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 2211820 - 2211689
Alignment:
| Q |
6 |
ccttgccttgaccccatttttgaacctccaccaaaaagaattaattatttgatccaactcttcacccaaagtagatggtaacaataaccatgaaatgcta |
105 |
Q |
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| T |
2211820 |
ccttgccttgaccacatttttgaacctccaccaaaaagaattgattatttgatcgaactcttcacccaaagtagatggtaacaatacccatgaaatgcta |
2211721 |
T |
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| Q |
106 |
acataaaagtttttcggtgttgttcatataat |
137 |
Q |
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| T |
2211720 |
acataaaagtttttcggtgttgttcatataat |
2211689 |
T |
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Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 2211657 - 2211570
Alignment:
| Q |
135 |
aattcaatatttcccaaataattcaccaagtttaaaacgagtaattttgattcttcaactttacgctcttctgtatttactaatttct |
222 |
Q |
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| T |
2211657 |
aattcaatatttcccaaataattcaccaagtttaaaacgagtaattttgattcttcaactttacgctcttctgtatttactaatttct |
2211570 |
T |
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