View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4135_low_2 (Length: 430)
Name: NF4135_low_2
Description: NF4135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4135_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 3 - 421
Target Start/End: Original strand, 25062260 - 25062678
Alignment:
| Q |
3 |
atcattcacgaataagagaccaaataatgcccgcaatatatcaaggccagtctacatcttcagggaaaggcacattggagtaattaacagttgtcttccc |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25062260 |
atcattcacgaataagagaccaaataatgcccgcaatatatcaaggccagtctacatcttcagggaaaggcacgttggagtaattaacagttgtcttccc |
25062359 |
T |
|
| Q |
103 |
atcaagagaaactatatcataaggagaatcttctccaaattcaattggcattagcttccaatatagacttggttcccactctgcttctttgattacattc |
202 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25062360 |
atcaagagaaactatatcataaggtgaatcttctccaaattcagttggcattagcttccaatatagacttggttcccactctgcttctttgattacattc |
25062459 |
T |
|
| Q |
203 |
aatatttcctttgttactgtttcactcccctcatttgatagatgaactccatcactaagaaataatcaaaccacctaaataaattacggagaaacaaatt |
302 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
25062460 |
aatatttcctttgttactatttcactcccctcatttgatagatgaactccatcactaagaaataatcaaaccacctaattaaattacggataaacaaatt |
25062559 |
T |
|
| Q |
303 |
tgaaacattatagtttaggtgcaaataaatgagaccatacttacatgaaacaaacatctctccaatcgtcgcttttctgaattgcagaccacatatcaat |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
25062560 |
tgaaacattatagtttaggtgcaaataaatgagaccatacttacatgaaacaaacatctctccaatcatctcttttctgaattgcagaccacatatcaat |
25062659 |
T |
|
| Q |
403 |
gacctttatgttcatctca |
421 |
Q |
| |
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||||||||||||||||||| |
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| T |
25062660 |
gacctttatgttcatctca |
25062678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 36 - 421
Target Start/End: Original strand, 25070999 - 25071381
Alignment:
| Q |
36 |
caatatatcaaggccagtctacatcttcagggaaaggcacattggagtaattaacagttgtcttcccatcaagagaaactatatcataaggagaatcttc |
135 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||| ||||||||||| |||||||| |
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| T |
25070999 |
caatatatcaaggccaatctacatcttcagggaaaggcacattggagaaattaa---ttgtcttcccatcaagagtaaccatatcataaggtgaatcttc |
25071095 |
T |
|
| Q |
136 |
tccaaattcaattggcattagcttccaatatagacttggttcccactctgcttctttgattacattcaatatttcctttgttactgtttcactcccctca |
235 |
Q |
| |
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|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| |
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| T |
25071096 |
tccaaattcagctggcattaacttccaatatagacttggttcccactctgcttctttgatgacattcaatatctcctttgttactatttcactcccctca |
25071195 |
T |
|
| Q |
236 |
tttgatagatgaactccatcactaagaaataatcaaaccacctaaataaattacggagaaacaaatttgaaacattatagtttaggtgcaaataaatgag |
335 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||| || ||| |||||| |||||| | ||||| | |
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| T |
25071196 |
tttgatagatgaactccatcactaagaaataatcaaaccacctaattaaattattgaaaaacaaatttgtaatattttagttttggtgcatacaaatgcg |
25071295 |
T |
|
| Q |
336 |
accatacttacatgaaacaaacatctctccaatcgtcgcttttctgaattgcagaccacatatcaatgacctttatgttcatctca |
421 |
Q |
| |
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||||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||| |||||||| |||| || ||||||||| |
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| T |
25071296 |
accatacttacatgaaacaaaaatctctccaatcatctcttttttgaattgcagaccacgtatcaatggccttgattttcatctca |
25071381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 37 - 421
Target Start/End: Original strand, 25083904 - 25084287
Alignment:
| Q |
37 |
aatatatcaaggccagtctacatcttcagggaaaggcacattggagtaattaacagttgtcttcccatcaagagaaactatatcataaggagaatcttct |
136 |
Q |
| |
|
||||||||||||||| |||||| | ||||| |||||||||| |||| |||||| | || ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25083904 |
aatatatcaaggccactctacaccatcaggaaaaggcacatcggagaaattaatatttatcttcccatcaagagaaaccatatcataaggagaatcttct |
25084003 |
T |
|
| Q |
137 |
ccaaattcaattggcattagcttccaatatagacttggttcccactctgcttctttgattacattcaatatttcctttgttactgtttcactcccctcat |
236 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||||| || ||||||||| |||||||||||| | |
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|
| T |
25084004 |
ccaaattcagctggcattaacttccaatatagacttggtttccactctgcttcttcgatgacattcaatatctcttttgttactatttcactccccttgt |
25084103 |
T |
|
| Q |
237 |
ttgatagatgaactccatcactaagaaataatcaaaccacctaaataaattacggagaaacaaatttgaaacattatagtttaggtgcaaataaatgaga |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | ||||| ||||||| || |||||||||||||| ||| ||| ||||||||| | |||||||| |
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|
| T |
25084104 |
ttgatagatgaactccatcactaagaaataatcaaatcccctaattaaattattgataaacaaatttgaaatattttag-ttaggtgcatacaaatgaga |
25084202 |
T |
|
| Q |
337 |
ccatacttacatgaaacaaacatctctccaatcgtcgcttttctgaattgcagaccacatatcaatgacctttatgttcatctca |
421 |
Q |
| |
|
| |||||||| ||||||||||||||||||||| || ||||||||||||||||||||| ||||||| ||||||| ||||||||| |
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|
| T |
25084203 |
tcgtacttacacgaaacaaacatctctccaatcatctattttctgaattgcagaccacaaatcaatggcctttattttcatctca |
25084287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 38 - 325
Target Start/End: Original strand, 25089683 - 25089973
Alignment:
| Q |
38 |
atatatcaaggccagtctacatcttcagggaaaggcacattggagtaattaacagttgtcttcccatcaagagaaactatatcataaggagaatcttctc |
137 |
Q |
| |
|
|||||||||||||| |||||| ||| ||| ||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| | |||||||| |
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|
| T |
25089683 |
atatatcaaggccactctacaccttgaggaaaaggcacattggagaaattaacagttgtcttcccgtcaagagaaaccatatcataaggtgtatcttctc |
25089782 |
T |
|
| Q |
138 |
caaattcaattggcattagcttccaatatagacttggttcccactctgcttctttgattacattcaatatttcctttgttactgtttcactcccctcatt |
237 |
Q |
| |
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|||||||| |||||||| ||| |||||||||||||||||||||||||||| || || ||||||||||| |||||||||||| |||||||||||||| | |
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| T |
25089783 |
caaattcagctggcattaacttacaatatagacttggttcccactctgctttctttatgacattcaatatctcctttgttactatttcactcccctcagt |
25089882 |
T |
|
| Q |
238 |
tgatagatgaactccatcactaagaaataatcaaaccacctaaataa---attacggagaaacaaatttgaaacattatagtttaggtgca |
325 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||| || ||| |||| || |||||||||| ||||||| ||| ||||||||| |
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|
| T |
25089883 |
tgataaatgtactccatcactaagaaataatcaaaccaccaaactaaattattattgataaacaaatttaaaacattttagattaggtgca |
25089973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 128 - 417
Target Start/End: Original strand, 25058169 - 25058464
Alignment:
| Q |
128 |
gaatcttctccaaattcaattggcattagcttccaatatagacttggttcccactctgcttctttgattacattcaatatttcctttgttactgtttcac |
227 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| || || | ||||||||||| || |||||| |
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| T |
25058169 |
gaatcttctccaaattcaactggcattgtcttccaatatagatttggttcccactctgcttctttgataaccttaattatttcctttgacaccatttcac |
25058268 |
T |
|
| Q |
228 |
tcccctcatttgatagatgaactccatcactaagaaataatcaaaccacctaaataaattacggagaaacaaatttgaaacat---tat-agtttaggtg |
323 |
Q |
| |
|
|||||||| || | ||||| ||||||||||| |||||| |||| || |||| ||||| | || | ||||||||| | || ||| | | |||| |
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|
| T |
25058269 |
tcccctcagcagagaaatgaattccatcactaaaaaataaccaaatcatctaattaaatcattgaaatgcaaatttgatatatatttattaatataggga |
25058368 |
T |
|
| Q |
324 |
caaa--taaatgagaccatacttacatgaaacaaacatctctccaatcgtcgcttttctgaattgcagaccacatatcaatgacctttatgttcat |
417 |
Q |
| |
|
|| | || |||||| || ||||||||||||||||| ||| ||||||| || ||| |||||||| |||||||| ||||||| |||| |||||||| |
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|
| T |
25058369 |
catacatatatgagagcacacttacatgaaacaaacttctttccaatcatctcttctctgaattaaagaccacaaatcaatggccttgatgttcat |
25058464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 333 - 421
Target Start/End: Original strand, 25090491 - 25090579
Alignment:
| Q |
333 |
gagaccatacttacatgaaacaaacatctctccaatcgtcgcttttctgaattgcagaccacatatcaatgacctttatgttcatctca |
421 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| || ||||||| |||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
25090491 |
gagatcatacttacatgaaacaaacatctttccaatcatctcttttctaaattgcagaccacatatcaatgacctttattttcatctca |
25090579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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