View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4135_low_3 (Length: 380)
Name: NF4135_low_3
Description: NF4135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4135_low_3 |
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| [»] scaffold0856 (2 HSPs) |
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Alignment Details
Target: scaffold0856 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 2300 - 2075
Alignment:
| Q |
2 |
agaaggacaagaatgaaaaacaacacgaacaatttacataaaagtagcaccatctttaacaagtcagtttgcgcatgtgtttccttcttgaagagtgtgg |
101 |
Q |
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| T |
2300 |
agaaggacaagaatgaaaaacaacaacaacaatttacataaaagtagcaccatctttaacaagccagtttgcgcatgtttttccttcttgaagagtgtgg |
2201 |
T |
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| Q |
102 |
ttgaaattgagatttcaatcataaaagaagtgtttcttcatacgggataccgatggtgcatatgagtgagttaaggggtgattgtcttccaaaacaagca |
201 |
Q |
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| T |
2200 |
ttgaaattgagatttcaatcataaaagaagtgtttcttcatacgggataccgatggtgcatatgagtgagttaaggggtgattgtcttccaaaataagca |
2101 |
T |
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| Q |
202 |
acattgacagtgagtcagactcacat |
227 |
Q |
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| T |
2100 |
acgttgacattgagtcagacttacat |
2075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 249 - 364
Target Start/End: Complemental strand, 1902 - 1787
Alignment:
| Q |
249 |
ttccaagccaaatctaaattgtggtcaatagcaaacagtttaacattcatgtttgtagtgtgatcacaataatcaaagcatccaataaaccaatcgccac |
348 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1902 |
ttccaagcgaaatctaaattgtggtcaatagcaaacagtttaacattcatgtttgtagtgtgatcacaataatcaaagcatccaataaaccaatcgccac |
1803 |
T |
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| Q |
349 |
tagaattacgaatgat |
364 |
Q |
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| T |
1802 |
tagaattacgaatgat |
1787 |
T |
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