View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4135_low_4 (Length: 374)
Name: NF4135_low_4
Description: NF4135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4135_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 40696418 - 40696088
Alignment:
| Q |
18 |
ggatatagtttctttgttgttggatatggagaaggagaatggaaagaagagtcaaggtcaagttataacctatttgaccccgtcgttcgctcaactgtgc |
117 |
Q |
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| T |
40696418 |
ggatatagtttctttgttgttggatatggagaaggagaatggaaagaagagtcaaggtcaagttataacctatttgaccccgtcgttcgctcaactgtgc |
40696319 |
T |
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| Q |
118 |
aagtgttccctggaggatggagtgcagtttatgtgtatcctgacaatccaggaatgtggaacttgagatcacagaatttgaaaagttggtatttaggtga |
217 |
Q |
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| T |
40696318 |
aagtgttccctggaggatggagtgcagtttatgtgtatcctgacaatccaggaatgtggaacttgagatcacagaatttgaaaagttggtatttaggtga |
40696219 |
T |
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| Q |
218 |
agagctttatgtgagagtttttgatcctaatcctaaccctgccaaagagaaacctcctccacagaatctacttttatgtggttagttacttattatatac |
317 |
Q |
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| T |
40696218 |
agagctttatgtgagagtttttgatcctaatcctaaccctgccaaagagaaacctcctccacagaatctacttttatgtggttagttacttattatatac |
40696119 |
T |
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| Q |
318 |
ttcatgtgaaaaatttatcttattgatgcta |
348 |
Q |
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| T |
40696118 |
ttcatgtgaaaaatttatcttattgatgcta |
40696088 |
T |
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