View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4135_low_5 (Length: 367)
Name: NF4135_low_5
Description: NF4135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4135_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 10 - 352
Target Start/End: Original strand, 3216662 - 3217004
Alignment:
| Q |
10 |
acatcatcaccgtcttcaactgcagcatccattcctgctaatgttgcactctcaggacaaccactgctgctgcatactttgtagattgccaagtgtgcat |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3216662 |
acatcaacaccgtcttcaactgcagcatccattcctgctaatgttgcactctcaggacaaccactgctgctgcatactttgtagattgccaagtgtgcat |
3216761 |
T |
|
| Q |
110 |
ctggtgccatgcctgttgccgtacctttagcgttgccgaagacattggccccctgtacaagccttccagcagccgtgctggccgtgtgagttccgtggcc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3216762 |
ctggtgccatgcctgttgccgtacctttagcgttgccgaagacattggccccctgtacaagccttccagcagccgtgctggccgtgtgagttccgtggcc |
3216861 |
T |
|
| Q |
210 |
aacatcatcgaatggaagagataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtgg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3216862 |
aacatcatcgaatggaagagataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtgg |
3216961 |
T |
|
| Q |
310 |
ccattccattttgcaggtggagagggcattcccccgtcagaaa |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3216962 |
ccattccattttgcaggtggagagggcattccctcgtcagaaa |
3217004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 25 - 352
Target Start/End: Original strand, 3208738 - 3209056
Alignment:
| Q |
25 |
tcaactgcagcatccattcctgctaatgttgcactctcaggacaaccactgctgctgcatactttgtagattgccaagtgtgcatctggtgccatgcctg |
124 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| ||| |||| |||||| | || ||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
3208738 |
tcaactgcagcatccattccagctaatattgaactttcagtacaaccgtagatgttgcatactttgtaaattgccaagtgtgcatatggtgccatgccaa |
3208837 |
T |
|
| Q |
125 |
ttgccgtacctttagcgttgccgaagacattggccccctgtacaagccttccagcagccgtgctggccgtgtgagttccgtggccaacatcatcgaatgg |
224 |
Q |
| |
|
|||| ||||| ||||| || || |||||||| || || || || |||||||||| ||||||||||| ||||||||||| ||||||||||||||| |||| |
|
|
| T |
3208838 |
ttgcagtaccattagcattaccaaagacattagcaccttgcacgggccttccagcggccgtgctggctgtgtgagttccatggccaacatcatcgtatgg |
3208937 |
T |
|
| Q |
225 |
aagagataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtggccattccattttgca |
324 |
Q |
| |
|
||| ||| ||||| || ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3208938 |
aagggatgaattt---------acaaaggtccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgca |
3209028 |
T |
|
| Q |
325 |
ggtggagagggcattcccccgtcagaaa |
352 |
Q |
| |
|
||||| || ||||| ||| | ||||||| |
|
|
| T |
3209029 |
ggtggtgaaggcatcccctcatcagaaa |
3209056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 10 - 342
Target Start/End: Original strand, 3202749 - 3203072
Alignment:
| Q |
10 |
acatcatcaccgtcttcaactgcagcatccattcctgctaatgttgcactctcaggacaaccactgctgctgcatactttgtagattgccaagtgtgcat |
109 |
Q |
| |
|
|||||| |||| || ||||| ||| |||||||||| |||||| | |||| |||| ||||||| | || |||||||||||| |||||||||||||||| |
|
|
| T |
3202749 |
acatcaacaccatcatcaacagcaacatccattccagctaatatgacactttcagcacaaccaaagacgccgcatactttgtaaattgccaagtgtgcat |
3202848 |
T |
|
| Q |
110 |
ctggtgccatgcctgttgccgtacctttagcgttgccgaagacattggccccctgtacaagccttccagcagccgtgctggccgtgtgagttccgtggcc |
209 |
Q |
| |
|
|||||||||||| |||| ||||| || || || || |||||||| || || | || |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3202849 |
atggtgccatgccaattgcagtaccattggcattaccaaagacattagcacctttcacgggccttccagcggccgtgctggccgtgtgagttccgtggcc |
3202948 |
T |
|
| Q |
210 |
aacatcatcgaatggaagagataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtgg |
309 |
Q |
| |
|
||||| |||| ||||||| ||| ||||| |||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
3202949 |
aacataatcgtatggaagggatgaattt---------acgatgttccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatgg |
3203039 |
T |
|
| Q |
310 |
ccattccattttgcaggtggagagggcattccc |
342 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
3203040 |
ccattccattttgcaggtggagaaggcattccc |
3203072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University