View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4135_low_8 (Length: 310)
Name: NF4135_low_8
Description: NF4135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4135_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 22603956 - 22603679
Alignment:
| Q |
16 |
aatattaaggaaagaaaagtgagcaaaaagctaattaaaaaacctgttatgagcactaactgtttaaggaaccattctttgtggaagacaaaagtcaaca |
115 |
Q |
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|||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
22603956 |
aatattaaggaaagaaaattgagtgaaaagctaattaagaaacctgttatgagcactaattgtttaaggaaccattcattgtggaagacaaaagtcaaca |
22603857 |
T |
|
| Q |
116 |
acaacatttaattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgtcgtacataaaaacccgacct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22603856 |
acaacatttaattgctcaaaagaaacaacatttctctagggattccaatcatcggtcaccaaatcctttctgaagtgtgtcgtacataaaaacccgacct |
22603757 |
T |
|
| Q |
216 |
gcaagcactgaagttggtgtttgtaatttacctgttgcacattaccctagaaaaagaatgtgatgcgatgtccttggt |
293 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
22603756 |
gcaagcactgaagttggtgtttgtattttacctgttgcacattaccctagaaaaagaatgtgacacgatgtccctggt |
22603679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 45622433 - 45622159
Alignment:
| Q |
19 |
attaaggaaagaaaagtgagcaaaaagctaattaaaaaacctgttatgagcactaactgtttaaggaaccattctttgtggaagacaaaagtcaacaaca |
118 |
Q |
| |
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|||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45622433 |
attaaggatagaaaagtgagcgaaaagctaattaagaaacctgttatgagcactaactgtttaaggaaccattctttgtggatgacaaaagtcaacaaca |
45622334 |
T |
|
| Q |
119 |
acatttaattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgtcgtacataaaaacccgacctgca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45622333 |
acatttaattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgtcgtacataaaaacccgacctaca |
45622234 |
T |
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| Q |
219 |
agcactgaagttggtgtttgtaatttacctgttgcacattaccctagaaaaagaatgtgatgcgatgtccttggt |
293 |
Q |
| |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||| |||| |
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| T |
45622233 |
agcaccgaagttggtgtttgtattttacctgttgcacattaccctagaaaaagaatgcgacccgatgtccctggt |
45622159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 15213963 - 15214202
Alignment:
| Q |
19 |
attaaggaaagaaaagtgagcaaaaagctaattaaaaaacctgttatgagcactaactgtttaaggaaccattctttgtggaagacaaaagtcaacaaca |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15213963 |
attaaggatagaaaagtgagcaaaaagctaattaagaaacatgttatgagcactaactgtttaagg------------tggaagacaaaagtcaacaaca |
15214050 |
T |
|
| Q |
119 |
acatttaattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgtcgtacataaaaacccgacctgca |
218 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15214051 |
tcatttcattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgtcgttcataaaaacccgacctgct |
15214150 |
T |
|
| Q |
219 |
agcactgaagttggtgtttgtaatttacctgttgcacattaccctagaaaaagaatgtg |
277 |
Q |
| |
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|||||||||| ||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
15214151 |
agcactgaag-------ttgtattttacctgttgcacgttaccctagaaaaagaatgtg |
15214202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 15253182 - 15253421
Alignment:
| Q |
19 |
attaaggaaagaaaagtgagcaaaaagctaattaaaaaacctgttatgagcactaactgtttaaggaaccattctttgtggaagacaaaagtcaacaaca |
118 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15253182 |
attaaggatagaaaagtgagcaaaaagctaattaagaaacatgttatgagcactaactgtttaagg------------tggaagacaaaagtcaacaaca |
15253269 |
T |
|
| Q |
119 |
acatttaattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgtcgtacataaaaacccgacctgca |
218 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15253270 |
tcatttcattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgtcgttcataaaaacccgacctgct |
15253369 |
T |
|
| Q |
219 |
agcactgaagttggtgtttgtaatttacctgttgcacattaccctagaaaaagaatgtg |
277 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
15253370 |
agcactgaag-------ttgtattttacctgttgcacgttaccctagaaaaagaatgtg |
15253421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 20188742 - 20188505
Alignment:
| Q |
19 |
attaaggaaagaaaagtgagcaaaaagctaattaaaaaacctgttatgagcactaactgtttaaggaaccattctttgtggaagacaaaagtcaacaaca |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| ||||| |||||||||||||||| |
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| T |
20188742 |
attaaggaaagaaaagtgagtgaaaagctaattaagaaacctgttatgaacactaactgtttaagg------------tggaaaacaaaagtcaacaaca |
20188655 |
T |
|
| Q |
119 |
acatttaattgctcaaaagaaacaacatttctctaggaattccaatcatcggtcaccaaatcctttctgaagtgtgtcgtacataaaaacccgacctgca |
218 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20188654 |
tcatttaattgatcaaaagaaacaacatttctctaggaatttcaatcatcggtcaccaaatcctttctgaagtgtgtcgtacataaaaacccgatctgca |
20188555 |
T |
|
| Q |
219 |
agcactgaagttggtgtttgtaatttacctgttgcacattaccctagaaaaagaatg |
275 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
20188554 |
agcactgaag-------ttgtattttacctgttgcacattaccctagaaaaagaatg |
20188505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 24630601 - 24630537
Alignment:
| Q |
104 |
caaaagtcaacaacaacatttaattgctcaaaagaaacaacatttctctaggaattccaatcatc |
168 |
Q |
| |
|
||||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
24630601 |
caaaagtcagaaccaacattgaattgctcaaaagaaacaacatttatctaggaattccaatcatc |
24630537 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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